BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0070.p
         (792 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ...   444   e-125
gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas...   301   2e-82
gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ...   288   1e-78
gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ...   218   2e-57
gi|300313072|ref|YP_003777164.1| high-affinity K+ transport syst...   146   7e-36

>gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 744

 Score =  444 bits (1142), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 293/672 (43%), Positives = 407/672 (60%), Gaps = 30/672 (4%)

Query: 118 EEENPELRDFQRRFW-------LTLPLTVLVTVLAMAGSRLFPHGLTGQSWIELALGTPV 170
           EE  P  +     +W       L+LPL     VL M  + L  H      W  L L TPV
Sbjct: 79  EEAAPTAKTALSSWWPVALSAALSLPL-----VLPMLLAPLGVHWSLPPLWQWL-LATPV 132

Query: 171 VLYAGWPFLTRGVDSIVHRSPNMWTLISSGLVAAYGYSVVATVFPELFPKAFMEHGRIGV 230
             + GW F   G  ++  RS NM  L++ G  AAYG S+   +     P   M    +  
Sbjct: 133 QFWLGWRFYHAGWGALRARSGNMDLLVALGTSAAYGLSLWQWLTLPTMPGHAMAMPHL-- 190

Query: 231 YFEAAAVIISLTLLGQILELRARSQTSAAIKSLLGLAPKTARRIAADGTEEDIPLSNVHI 290
           YFE++AV+I+L LLG+ LE RA+ QT+ AI +L  L P+ AR +  DG + ++PL+ V +
Sbjct: 191 YFESSAVVITLVLLGKWLEGRAKRQTADAIAALNALRPENAR-VRRDGQDIEVPLAQVRV 249

Query: 291 GDLLRVRPGEKVATDGVVVEGESAIDESMLTGEPVPVTKRPGDKVIGATINASGSLIIRS 350
           GDL+ +RPGE+V  DGVV EG S +DE+MLTGE  P  K+ GD +   +INA G L++ +
Sbjct: 250 GDLVVLRPGERVPVDGVVREGRSHLDEAMLTGESRPQAKQAGDPLTAGSINAEGVLVMET 309

Query: 351 EKVGSQTMLSQIVQMVAQAQRSRAPMQRLADVVAGYFVVIVVGIAVLTLLSWGFFGPQPS 410
             +G++T+L++IV+MV QAQ ++AP+QRL D V+  FV  V+ +++LTLL   +   Q +
Sbjct: 310 TAIGAETVLARIVRMVEQAQAAKAPIQRLVDQVSAVFVPAVLLLSLLTLLG--WGLVQGN 367

Query: 411 WVYGFVNAVAVLIIACPCALGLATPMSIMAATGRAATQGILFRDAAAIESMKKLDTLIVD 470
           W    +NAVAV++IACPCALGLATP +IMA TG AA  GIL +DA A+E   +++ +  D
Sbjct: 368 WEQALLNAVAVMVIACPCALGLATPTAIMAGTGVAARHGILIKDAEALEIAHRVNAVAFD 427

Query: 471 KTGTLTEGKPAFDRIIAAPGSQETEVLQLAASLDQGSEHPLAHAIVAEARRRQLSLMTPS 530
           KTGTLT G P    + A P +Q  E+L LAA+L   SEHPL  A+   A +   +     
Sbjct: 428 KTGTLTLGHPRLLELEATPSTQPDELLALAAALQAHSEHPLGRAVREAAAQSAQAARQAE 487

Query: 531 SFESSSGIGVRGVVNGARVALGNTTLMEAEGVSYEALLSEAETLRAEGASVMYLAR---S 587
              S +G+G+ GVV G ++ LG++  M+       AL + AE L+A+G ++ +LAR   S
Sbjct: 488 QVRSVAGLGIEGVVEGRQLMLGSSRWMQQLQAHAPALQARAEQLQAQGRTLSWLARRNDS 547

Query: 588 GV-LLGLLAVSDPVKETTREALASLKEAGLTVVMATGDGTTTAKAVAGKLGISEVYGEVK 646
           GV +LGLLA  D +K   + A+A+L   G+   M +GD    A+ VA +LGI EV  EV 
Sbjct: 548 GVEVLGLLAFGDQIKPGAQAAIATLHRMGVRSAMLSGDNLGAAQQVASELGIQEVRAEVL 607

Query: 647 PQDKLALVERFQAEG-KIVGMAGDGINDAPALAKANVGIAMGTGTDVAINSAHVTLVKGD 705
           P DK   V   +  G ++V M GDG+NDAPALA A+VG+AM TGTDVA+ +A VTL+ GD
Sbjct: 608 PADKAEAVTALRQGGAQVVAMVGDGVNDAPALAAADVGMAMSTGTDVAMQAAGVTLMHGD 667

Query: 706 LRAIARARGLSVETVRNMRQNLSFAFLYNALGIPLAAGLLYPFTGQLLSPMVAAVAMSLS 765
              +A A  +S  T   +RQNL +AF+YN +GIPLAA         LL+PM+A  AM+ S
Sbjct: 668 PGLVADAIDISRRTYAKIRQNLFWAFIYNLVGIPLAA-------LGLLNPMLAGAAMAFS 720

Query: 766 SVSVIGNALRLR 777
           SVSV+ NAL LR
Sbjct: 721 SVSVVSNALLLR 732


>gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 778

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 313/558 (56%), Gaps = 26/558 (4%)

Query: 228 IGVYFEAAAVIISLTLLGQILELRARSQTSAAIKSLLGLAPKTARRIAADGTEEDIPLSN 287
           IG + EAA VI+  TL  +++E  +  +   AI  LL + P  A R   DG    +P   
Sbjct: 227 IGQWPEAAVVIVLFTL-AEMIEALSLDRARNAIAGLLAMTPDMATRRGEDGVWSTVPART 285

Query: 288 VHIGDLLRVRPGEKVATDGVVVEGESAIDESMLTGEPVPVTKRPGDKVIGATINASGSLI 347
           V + D +RV PGE+V  DG+V+ G ++I+++ +TGE +PV K+ GD V   TIN  G+  
Sbjct: 286 VTVDDTVRVAPGERVPLDGLVLSGSTSINQAPITGESIPVQKQAGDPVFAGTINEQGAFE 345

Query: 348 IRSEKVGSQTMLSQIVQMVAQAQRSRAPMQRLADVVAGYFV-----VIVVGIAVLTLLSW 402
           +R       + L++IV+ V QAQ  RAP QR  D  A Y++     + V+   +  LL+ 
Sbjct: 346 MRVTAAQGDSTLARIVKSVQQAQGQRAPTQRFVDNFARYYIPAVVVMAVLVALLPPLLAG 405

Query: 403 GFFGPQPSWVYGFVNAVAVLIIACPCALGLATPMSIMAATGRAATQGILFRDAAAIESMK 462
             F P   W+Y    A+ +L+IACPCAL ++TP++I++    AA  GIL +    +E  +
Sbjct: 406 AAFQP---WLY---KALVLLVIACPCALVISTPVTIVSGLASAARHGILVKGGVYLEQGR 459

Query: 463 KLDTLIVDKTGTLTEGKPAFDRIIAAPGSQETE-VLQLAASLDQGSEHPLAHAIVAEARR 521
           +L  L +DKTGTLT GKP    +++     + + +LQLA SL   S+HP++ AI A+   
Sbjct: 460 QLRALALDKTGTLTFGKPRVTDVVSLQAQADQQALLQLAVSLAARSDHPVSRAIAAQ--- 516

Query: 522 RQLSLMTPSSFESSSGIGVRGVVNGARVALGNTTLMEAEGVSYEALLSEAETLRAEGASV 581
            +++ +  S F + +G GV+G +NG  + LGN  L+   G     L +  +    +G + 
Sbjct: 517 EEIATVEVSEFAALAGRGVQGRINGQLLHLGNHRLVHELGQCSPELEARLQAFEKQGKTT 576

Query: 582 MYLARSGVLLGLLAVSDPVKETTREALASLKEAGLTVVMATGDGTTTAKAVAGKLGISEV 641
             L   G    L+AV+D V+ ++R+A+A L+  G+ V+M TGD + TA+A+A + GIS+ 
Sbjct: 577 TVLCLDGQPQLLVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGISDA 636

Query: 642 YGEVKPQDKLALVERFQAEGKI--VGMAGDGINDAPALAKANVGIAMG-TGTDVAINSAH 698
            G+  P+DKL  +E       +  VGM GDGINDAPALA+A++G AMG  GTD A+ +A 
Sbjct: 637 RGDQLPEDKLKAIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAGTDTALETAD 696

Query: 699 VTLVKGDLRAIARARGLSVETVRNMRQNLSFAFLYNALGIPLAAGLLYPFTGQLLSPMVA 758
           V L+  DLR I     LS +    + QN+S A    A+ + LA        G + S  +A
Sbjct: 697 VALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLA------LVG-MSSLWMA 749

Query: 759 AVAMSLSSVSVIGNALRL 776
             A   +S+ V+ N LRL
Sbjct: 750 VFADMGASLIVVFNGLRL 767


>gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 839

 Score =  288 bits (738), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 214/681 (31%), Positives = 349/681 (51%), Gaps = 38/681 (5%)

Query: 106 GMSLEPLLPLDQEEE--NPELRDFQRRFWLTLPLTVLVTV---LAMAGSRLFPHGLTGQS 160
           G +  P  PL Q E+      R F++ F   L +  ++     + M    + P  ++   
Sbjct: 163 GYTAYPFDPLRQGEQARRASRRLFRQLFIAGLSMMQVMMYAVPVYMTHEGIDPDMMSLMR 222

Query: 161 WIELALGTPVVLYAGWPFLTRGVDSIVHRSPNMWTLISSGLVAAYGYSVVATVFPELFPK 220
           W  L L  P V Y+  PF T     +  R+P M   ++ G+ AA+  S +AT        
Sbjct: 223 WASLFLTIPAVFYSALPFFTGAWAGLRARAPGMDLPVAIGIAAAFLASAIAT-------- 274

Query: 221 AFMEHGRIGVYFEAAAVIISLTLLGQILELRARSQTSAAIKSLLGLAPKTARRIAADGTE 280
                G   ++F++ ++ I L L  + LE  AR ++++A++ +    P +A  + A G  
Sbjct: 275 ---WRGEGEIWFDSVSMFIFLLLGSRYLEAAARRKSASALERMQQAFPASA--LLAPGYP 329

Query: 281 ED-----IPLSNVHIGDLLRVRPGEKVATDGVVVEGESAIDESMLTGEPVPVTKRPGDKV 335
           E      +  + +  GD++  RPG+ +A D  ++EG    D ++L+GE  P + + G + 
Sbjct: 330 EQRETTLVVAAQLREGDVILARPGDTIAADACLLEGAGEFDLALLSGESRPQSFQIGQEA 389

Query: 336 IGATINASGSLIIRSEKVGSQTMLSQIVQMVAQAQRSRAPMQRLADVVAGYFVVIVVGIA 395
            G  +N S  + +R  +   ++ L+ + ++  QA + +  + + ADVVA  FVV ++ +A
Sbjct: 390 PGGAVNLSQPVFLRVVRATGESTLAALTRLAEQAGQGKPALAQWADVVASRFVVALLLLA 449

Query: 396 VLTLLSWGFFGPQPSWVYGFVNAVAVLIIACPCALGLATPMSIMAATGRAATQGILFRDA 455
             T L+W    P  +W      A+AVL+++CPCAL LATP ++ AAT R    G L    
Sbjct: 450 GATFLAWQLIDPTRAWS----TAIAVLVVSCPCALSLATPSALAAATDRLLRAGTLIVRG 505

Query: 456 AAIESMKKLDTLIVDKTGTLTEGKPAFDRIIAAPGSQETEVLQLAASLDQGSEHPLAHAI 515
             +E++++ DT++ DKTGTLT+G+P    + +    Q +  L +AA++++GS HPLA A+
Sbjct: 506 NVLETLQRADTIVFDKTGTLTQGRPQLTALWSDVDCQRS--LAIAAAMERGSLHPLAKAL 563

Query: 516 VAEARRRQLSLMTPSSFESSSGIGVRGVVNGARVALGNTTLMEAEGVSYEALLSEAETLR 575
           V E  RRQ+  +      S +G G++G++ G    +G+ + +   G++  AL        
Sbjct: 564 VEEGARRQVDALEVEQLTSVTGAGMQGMIEGDLYRIGSRSFVA--GLAGTALPPVLLQSA 621

Query: 576 AEGASVMYLARSGVLLGLLAVSDPVKETTREALASLKEAGLTVVMATGDGTTTAKAVAGK 635
           A GA  +YL  S   L    ++D ++      +A+ +  GL  ++ +GD       VA  
Sbjct: 622 ASGAGSVYLGSSDGWLARFDLADALRTDAVATVAAFRALGLRTILLSGDQPEVCAEVAAA 681

Query: 636 LGISEVYGEVKPQDKLALVERFQAEGKIVGMAGDGINDAPALAKANVGIAMGTGTDVAIN 695
            GISEV     PQ KL  V   Q +G +V + GDGINDA  L   +V  AMG G  +A  
Sbjct: 682 AGISEVQAACTPQGKLDYVRNLQRDGAVVAIVGDGINDAAMLRAGDVSFAMGKGAALAQV 741

Query: 696 SAHVTLVKGDLRAIARARGLSVETVRNMRQNLSFAFLYNALGIPLAAGLLYPFTGQLLSP 755
           SA   ++   L+A+A    ++  T+  +RQNL +A  YN L IP AA         LL P
Sbjct: 742 SADAVIMSDRLQAVADCAAMAQRTMHIVRQNLVWAATYNFLAIPAAA-------FGLLDP 794

Query: 756 MVAAVAMSLSSVSVIGNALRL 776
            ++AV MSLSS+ V+GNALRL
Sbjct: 795 WMSAVGMSLSSLLVVGNALRL 815


>gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 734

 Score =  218 bits (554), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 240/449 (53%), Gaps = 14/449 (3%)

Query: 235 AAVIISLTLLGQILELRARSQTSAAIKSLLGLAPKTARRIAADGTEEDIPLSNVHIGDLL 294
           AAVI  +   G+ LE  A+ +    + +LLG AP  A R   +     I L+ V  GD L
Sbjct: 57  AAVIALMFAGGRALESVAQRRAQQEMSALLGKAPHVANRYEGERIVT-IGLNLVRPGDRL 115

Query: 295 RVRPGEKVATDGVVVEGESAIDESMLTGEPVPVTKRPGDKVIGATINASGSLIIRSEKVG 354
            VRPGE V  DG ++ G + +DESMLTGE +PV+   G  +    +NA  +  + +    
Sbjct: 116 LVRPGEPVPVDGRLL-GPAVVDESMLTGESLPVSHPQGATLASGCVNAGNAFDLLATSTD 174

Query: 355 SQTMLSQIVQMVAQAQRSRAPMQRLADVVAGYFVVIVVGIAVLTLLSWGFFGPQPSWVYG 414
             +  +Q++++V  AQ S+AP  R+AD  A  F+ +V+ +A L   SW   G  P     
Sbjct: 175 QSSTFAQVLRLVQAAQASQAPAARMADRYALLFIPLVLAMAAL---SWLLTG-DPR---- 226

Query: 415 FVNAVAVLIIACPCALGLATPMSIMAATGRAATQGILFRDAAAIESMKKLDTLIVDKTGT 474
              A+AV+++A PC L LA P++I+ A  R A +G+L +   A+E + ++ TL  DKTGT
Sbjct: 227 --RALAVVVVATPCPLILAVPVAIVCAMSRCAQRGVLIKHGGALEKLAQVRTLFFDKTGT 284

Query: 475 LTEGKPAFDRIIAAPGSQETEVLQLAASLDQGSEHPLAHAIVAEARRRQLSLMTPSSFES 534
           LT GK     ++  P  Q  E+L+LAASL+Q S H +A A+V+ A  R L L  P   + 
Sbjct: 285 LTAGKARLMNMVTTPSIQADELLRLAASLEQMSNHVIAQAVVSAAIERALVLSIPDQVQE 344

Query: 535 SSGIGVRGVVNGARVALGNTTLMEAEGVSYEALLSEAETLRAEGASVMYLARSGVLLGLL 594
             G G+ G V+G  V +G    +     +        + L+ EG + + +A  G L G+L
Sbjct: 345 QPGAGLSGRVDGKLVRVGAMQYVIGPSAAPPWTSGLRDRLKYEGGAGVCVAVDGQLCGVL 404

Query: 595 AVSDPVKETTREALASLKEAGLT-VVMATGDGTTTAKAVAGKLGISEVYGEVKPQDKLAL 653
            ++D ++  T  AL  L+  G   +VM TGD    A  +   LG  +V  E  P  KLA 
Sbjct: 405 YLADDIRLDTPRALRQLRALGAKRIVMLTGDRRDVAMTIGSSLGFDDVMPEQSPASKLAA 464

Query: 654 VERFQAEGKIVGMAGDGINDAPALAKANV 682
           +++   EG +  M GDGINDAPALA A++
Sbjct: 465 IKQASREG-VTMMVGDGINDAPALAAADI 492


>gi|300313072|ref|YP_003777164.1| high-affinity K+ transport system
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 730

 Score =  146 bits (368), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 155/551 (28%), Positives = 255/551 (46%), Gaps = 59/551 (10%)

Query: 189 RSPNMWTLISSGLVAAYGYSVVATVFPELFPKAFMEHGRI--GVYFEAAAVIISLTLLGQ 246
           R+P M+ +        Y  S++ T+   LF +A +  G    G  F  AA +    L   
Sbjct: 53  RNPVMFVV--------YLGSILTTL---LFIQAAVGQGEAPAGFIFAIAAWLWFTVLFAN 101

Query: 247 ILELRA--RSQTSAAI-----KSLLGLAPKTARRIAADGTE------EDIPLSNVHIGDL 293
             E  A  RS+  AA      KS++    + A  +  DG +      E +   ++  GDL
Sbjct: 102 FAEALAEGRSKAQAAALRGVKKSVMAKKLRRADHVRGDGMQVLASQCEVVEGDSLRKGDL 161

Query: 294 LRVRPGEKVATDGVVVEGESAIDESMLTGEPVPVTKRPG---DKVIGATINASGSLIIRS 350
           + +  G+ V  D  V+EG + +DES +TGE  PV +  G     V G T   S  +++R 
Sbjct: 162 VLIEAGDTVPADAEVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLSDWIVVRV 221

Query: 351 EKVGSQTMLSQIVQMVAQAQRSRAPMQRLADVVAGYFVVIVVGIAVLTLLSWGFFGPQPS 410
                +  L +++ MV  A+R + P +    ++     ++ + + V TLL +  F    +
Sbjct: 222 SVNPGEAFLDRMIAMVEGARRQKTPNELALTLLLVALTLVFLLVTV-TLLPFSIFSVNAA 280

Query: 411 WVYGFVNA---VAVLIIACPCALGLATPMSIMAATGRAATQGILFRDAAAIESMKKLDTL 467
                V+    +A+L+   P  +G       +A   R     ++     A+E+   +D L
Sbjct: 281 GSGSPVSVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIATSGRAVEAAGDVDVL 340

Query: 468 IVDKTGTLTEGKPAFDRIIAAPGSQETEVLQLAASLDQGSEHPLAHAIVAEA------RR 521
           ++DKTGT+T G       + APG  E E+  +A       E P   +IV  A      R 
Sbjct: 341 LLDKTGTITLGNRQAAAFMPAPGVTERELADVAQLASLADETPEGRSIVVLAKNRFNLRE 400

Query: 522 RQLSLM----TPSSFESS-SGI--GVRGVVNGARVALGNTTLMEAEGVSYEALLSEAETL 574
           R+++ +     P S ++  SGI  G R +  GA  A+   T    + +  + + S+ E++
Sbjct: 401 REMANLGAEFIPFSAQTRVSGIDLGHRRIRKGAADAIRKLTRAADQRLPAQ-VESDIESI 459

Query: 575 RAEGAS----VMYLARSGVL--------LGLLAVSDPVKETTREALASLKEAGLTVVMAT 622
              G +    + + A + ++        LG + + D VK   +E    L+  G+  VM T
Sbjct: 460 ARRGGTPLVVIEWHAEAAMINQGAPIRILGTVELKDIVKGGIKERFGELRRMGIKTVMIT 519

Query: 623 GDGTTTAKAVAGKLGISEVYGEVKPQDKLALVERFQAEGKIVGMAGDGINDAPALAKANV 682
           GD   TA A+A + G+ +   E  P+ KLAL+ + QAEGK+V M GDG NDAPALA+A+V
Sbjct: 520 GDNRLTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAEGKLVAMTGDGTNDAPALAQADV 579

Query: 683 GIAMGTGTDVA 693
            +AM +GT  A
Sbjct: 580 AVAMNSGTQAA 590


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,215,220
Number of extensions: 89682
Number of successful extensions: 443
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 8
Length of query: 792
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 699
Effective length of database: 1,179,515
Effective search space: 824480985
Effective search space used: 824480985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)