BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0063.p
         (437 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance ...   677   0.0  

>gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance
           cation efflux system outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/406 (84%), Positives = 372/406 (91%)

Query: 1   MYRHSFLLALALLAAGTSHAQSTAPGNTEQIQSSTASSLAKEPRLLSLPAAINLAFDQNR 60
           MYRHS LLAL LLAAG SHAQ TAP NTE  Q  TASSLA EPRLLSLPAAI+LA +QN+
Sbjct: 1   MYRHSILLALGLLAAGVSHAQDTAPANTEHPQPHTASSLASEPRLLSLPAAISLALEQNK 60

Query: 61  GLAAARKEIEAVEATIIQAGARPNPEFSALVEDTRKSTRTSTYLINQPIELGGKRDARIE 120
            LAAARKEIEAVEATIIQAGARPNPEFSAL+ED RKS+RT+TY + QPIELGGKR ARIE
Sbjct: 61  TLAAARKEIEAVEATIIQAGARPNPEFSALMEDFRKSSRTTTYQLTQPIELGGKRSARIE 120

Query: 121 AAQRARDMALLGYSAKRTEIRAGVVAAYYDVMVAKERQRLAKELLDLAKTAADMTGRRVT 180
           AAQR R+MALL Y+AKRTEIRAGV+AAYY+VMVA ERQRLAKELL LAKT+ADMT RRVT
Sbjct: 121 AAQRTREMALLDYAAKRTEIRAGVIAAYYEVMVAMERQRLAKELLGLAKTSADMTSRRVT 180

Query: 181 SGKISPVEQTKAKVAEASAQLELNQADSELILSQKKLAMFWGSVGNEFQLTDGGVETLPE 240
           +GKISPVEQTKA+VAE+SAQLEL+QADS+++L+QKKLA FWGSVGN FQLTDGGVE+LP 
Sbjct: 181 AGKISPVEQTKARVAESSAQLELHQADSDVLLAQKKLATFWGSVGNAFQLTDGGVESLPA 240

Query: 241 LPAIAQLTEKVAIGPAVKLAQLEVERRRALAKIESSKRIPDVNLTFGNKRDESAARNMWV 300
           LP+IAQLTEKVA GPAV+LAQLEVERRRALA+IE+SKR PDV L+FGNKRDES ARNMWV
Sbjct: 241 LPSIAQLTEKVAAGPAVQLAQLEVERRRALARIETSKRTPDVTLSFGNKRDESNARNMWV 300

Query: 301 VGISVPIPVFDSNKGNELEALKRVDKARDELSVVEVQMQSEAAQSFERLRNARDEAAALR 360
           VG SVPIPV DSNKGNELEALKRVD ARDELS+VEVQMQSEAAQSFERLRNAR+EA ALR
Sbjct: 301 VGFSVPIPVLDSNKGNELEALKRVDIARDELSIVEVQMQSEAAQSFERLRNAREEAVALR 360

Query: 361 GEIVPGAQSAYQAARTGFELGKFGYLDVLDAQRTFFQAKAQYWKAL 406
            EIVPGAQSAYQAARTGFELGKF YLDVLDAQRT+FQAKAQYWKAL
Sbjct: 361 NEIVPGAQSAYQAARTGFELGKFAYLDVLDAQRTYFQAKAQYWKAL 406


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,188,899
Number of extensions: 45193
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 6
Length of query: 437
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,203,190
Effective search space: 419913310
Effective search space used: 419913310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)