BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0060.p
         (519 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313717|ref|YP_003777809.1| cobalt-zinc-cadmium resistance ...   601   e-173

>gi|300313717|ref|YP_003777809.1| cobalt-zinc-cadmium resistance
           cation efflux system transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  601 bits (1550), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/345 (84%), Positives = 322/345 (93%)

Query: 175 SKEEGKIELNKEQMASAGIQVKTAGAMKMNSSLQLPGEIRFNEDRTAHVVPQVAGIVESV 234
           S EEGKI LN EQ+A+AGI+VKTAG M +NSS+QLPGEIRFNEDRTAHVVPQVAGIVESV
Sbjct: 52  SSEEGKIALNPEQIATAGIEVKTAGPMILNSSVQLPGEIRFNEDRTAHVVPQVAGIVESV 111

Query: 235 SANLGQKVKKGQVLAVVISSAISEQRSELLNSEQRLALAKTAYQREKGLWEQKISAEQDY 294
           SA LGQKV+KGQVLAV+ SSA+SEQRSE+LN+EQRLALA+TAYQREK LWEQKISAEQDY
Sbjct: 112 SAKLGQKVRKGQVLAVINSSAVSEQRSEMLNAEQRLALARTAYQREKQLWEQKISAEQDY 171

Query: 295 LQAQTTLREAEVAVRNAQQKLRAIGASPTSGGLNRYEIRAPFDGTVVEKHLGLGEAVRED 354
           LQAQ  LREAEVAVRNAQQKLRAIGA+ +SGGLNRYEIRAPFDG VVEKHLGLGEAV+ED
Sbjct: 172 LQAQAALREAEVAVRNAQQKLRAIGATASSGGLNRYEIRAPFDGVVVEKHLGLGEAVKED 231

Query: 355 ANAFLISDLSSVWAEIIVTPKDMQIVRVGEKVVVRATAFDSSTSGQISYVGSLIGEQSRT 414
           ANAFLISDLSSVWAEIIV+PKDMQ VR GEKV VRATAFD+S SG+ISYVGSLIGEQSRT
Sbjct: 232 ANAFLISDLSSVWAEIIVSPKDMQFVRTGEKVTVRATAFDASASGKISYVGSLIGEQSRT 291

Query: 415 AKAHVVLPNKDDNWRPGLFVNVEVVSDEGQVPVAVAADAIQTVDEKSVVFVRMSGGFAAQ 474
           AKAHV+LPN DD+WRPGLFVNVEVVSDE QVPVAV+A+A+QTV+EKSV+FVR+ GGFAAQ
Sbjct: 292 AKAHVILPNPDDSWRPGLFVNVEVVSDEAQVPVAVSAEALQTVEEKSVIFVRVPGGFAAQ 351

Query: 475 EVTLGRSNGKFVEIKSGLDAGVEYAATGSFAIKAELGKGTAEHGH 519
           +V  GRSNGKFVEI+SGL+AG EYAATGSFAIKAELGKG+AEH H
Sbjct: 352 QVVTGRSNGKFVEIRSGLNAGDEYAATGSFAIKAELGKGSAEHSH 396



 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 42/53 (79%), Gaps = 1/53 (1%)

Query: 25 MKGGSSAGGGEKSSAHQEDGSHKDNEHHGEDKGSGHKDSAEHADGEHHSTAPS 77
          M+ G+ AG  EKS AHQE+G HKDNEHHGE+KGS HKD+AEH +GEHH   PS
Sbjct: 1  MQAGTPAGA-EKSPAHQEEGGHKDNEHHGEEKGSEHKDAAEHGEGEHHDAEPS 52


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.127    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,465,553
Number of extensions: 59237
Number of successful extensions: 213
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 7
Length of query: 519
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,198,455
Effective search space: 515335650
Effective search space used: 515335650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 133 (55.8 bits)