BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0055.p
         (172 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbas...   341   2e-95
gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformyl...    91   7e-20

>gi|300313962|ref|YP_003778054.1| polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  341 bits (875), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 165/172 (95%), Positives = 171/172 (99%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           MALLNILRYPDPRLHK+A PVTVFDERIKKLVADMAETMYAAPGVGLAA+QVDVHEQVVV
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           IDVSD+GKNLQVFINPEI+WASE+KRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF
Sbjct: 61  IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKKKAG 172
           EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE+KKKAG
Sbjct: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKKKAG 172


>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA
           deformylase/polypeptide deformylase [Herbaspirillum
           seropedicae SmR1]
          Length = 178

 Score = 90.5 bits (223), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 14/164 (8%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDE-RIKKLVADMAETMYAAPGVGLAASQVDVHEQVV 59
           MA+  IL+  DPRL + A PVT F    + +LV DM +TM A  G GLAA Q+ V  Q+V
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 60  VIDVSDEGKNLQ----------VFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVK 109
           +      G+N +          V INP +   SE++    EGCLSVPG+   V R +R++
Sbjct: 61  IFGF---GQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLR 117

Query: 110 VRAFDADGKAFEVDADELLAVCIQHEMDHLKGKVFVEYLSPLKR 153
            +  D +G+  +   +   A  +QHE DHL+G ++   +   +R
Sbjct: 118 YQGVDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRR 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 490,930
Number of extensions: 17609
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,245,805
Effective search space: 115859865
Effective search space used: 115859865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)