BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0053.p
         (354 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313967|ref|YP_003778059.1| Zn-dependent hydrolase [Herbasp...   683   0.0  

>gi|300313967|ref|YP_003778059.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/354 (91%), Positives = 338/354 (95%)

Query: 1   MNALESQLDYAFGDTLPDTGHTMEVAPGVRWLRMGLPFALNHINLWLLQDELDTPQGRQR 60
           MNALESQLDY FGDTLP+ GH MEVAPGVRWLRMGLPFALNHINLWLL DE+DTP GRQR
Sbjct: 32  MNALESQLDYVFGDTLPEPGHVMEVAPGVRWLRMGLPFALNHINLWLLADEMDTPNGRQR 91

Query: 61  GWTVVDCGIATDDTRAAWERIFTEELDGLPILRVLVTHCHPDHVGLADWLCQRWQAPLWM 120
           GWTVVDCGIAT+DTR AWERIF +EL+GLPILRVLVTHCHPDHVGLA+WLCQRWQAPLWM
Sbjct: 92  GWTVVDCGIATEDTRQAWERIFADELEGLPILRVLVTHCHPDHVGLAEWLCQRWQAPLWM 151

Query: 121 STGDYAFARVMSAALPGAEGTAATPHFQRHGLADPQTVATLQGRNTYYQDLVPAVPHAYH 180
           STG+YAFARVMSAALPGAEGTAATPHFQRHGLADPQT+ATLQGRNTYYQDLVPAVP +YH
Sbjct: 152 STGEYAFARVMSAALPGAEGTAATPHFQRHGLADPQTIATLQGRNTYYQDLVPAVPRSYH 211

Query: 181 RMQDGHAVRIGGRDWEIITGFGHSPEHVSLYCAALNVLISGDMVLPRISTNVSVFAIEPE 240
           RMQDGHAV IGGRDWEIITGFGHSPEHVSLYC  LNVLISGDMVLPRISTNVSVFAIEPE
Sbjct: 212 RMQDGHAVAIGGRDWEIITGFGHSPEHVSLYCRDLNVLISGDMVLPRISTNVSVFAIEPE 271

Query: 241 SNPVQQYLDSLKKYGHLPADVLVLPSHGKPFRGLHTRIQQLNDHHRERLAEVLEACATPQ 300
           SNPVQQYLDSLKKY  LPAD LVLPSHGKPFRGLHTRI+QLNDHHR+RLAEVLEACATPQ
Sbjct: 272 SNPVQQYLDSLKKYAQLPADALVLPSHGKPFRGLHTRIEQLNDHHRQRLAEVLEACATPQ 331

Query: 301 TGVDILPVMFKRPLDTHQLSFALGEAVAHLHKLWYDGAVKRLLGEDGVYRFVAV 354
           TGVDILPVMFKR LDTHQLSFALGEAVAHLHKLWYDGAV+RL+GEDGVYRFV V
Sbjct: 332 TGVDILPVMFKRALDTHQLSFALGEAVAHLHKLWYDGAVRRLVGEDGVYRFVVV 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,343,375
Number of extensions: 61234
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,212,660
Effective search space: 324992880
Effective search space used: 324992880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)