BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0047.p (671 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylas... 1083 0.0 gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspiril... 395 e-111 gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin sub... 367 e-102 gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum... 362 e-101 gi|300310711|ref|YP_003774803.1| carbamoyl-phosphate synthase la... 57 4e-09 >gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 671 Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/671 (84%), Positives = 606/671 (90%) Query: 1 MFTKILIANRGEIACRVAATARRLGIATVAVYSDADAQAKHVAACDESVHLGPAPAKESY 60 MFTKILIANRGEIACRVAATARRLGIATVAVYSDADA+AKHVAACDESV LGPAPA+ESY Sbjct: 1 MFTKILIANRGEIACRVAATARRLGIATVAVYSDADARAKHVAACDESVRLGPAPARESY 60 Query: 61 LCADKIIAAALATGAQAIHPGYGFLSENAGFAQACADAGLVFIGPPASAIDAMGSKSAAK 120 LCA+KIIAAALATGAQAIHPGYGFLSENAGFAQACA AGLVFIGPPASAI+AMGSK+AAK Sbjct: 61 LCAEKIIAAALATGAQAIHPGYGFLSENAGFAQACAQAGLVFIGPPASAIEAMGSKAAAK 120 Query: 121 ALMEKAAVPLVPGYHGERQESDFLRAEADRIGYPVLLKASAGGGGKGMRVVERREDFEAA 180 ALME+AAVPLVPGYHGE QES L ++ADRIGYPVLLKASAGGGGKGMRVVER EDF+AA Sbjct: 121 ALMEQAAVPLVPGYHGEEQESGLLHSQADRIGYPVLLKASAGGGGKGMRVVERSEDFDAA 180 Query: 181 LASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADGHGNCVYLFERDCSVQRRHQKVLE 240 LASCKREAI+SFGDDRVLVEKYLTRPRHIEIQVFADGHG+CVYLFERDCSVQRRHQKVLE Sbjct: 181 LASCKREAIASFGDDRVLVEKYLTRPRHIEIQVFADGHGHCVYLFERDCSVQRRHQKVLE 240 Query: 241 EAPAPGMSCGRRAAMGEAAVAAARAVGYVGAGTVEFIANQDGSFYFMEMNTRLQVEHPVT 300 EAPAPGMS RRAAMGEAAVAAARAVGYVGAGTVEFIANQDGSFYFMEMNTRLQVEHPVT Sbjct: 241 EAPAPGMSEERRAAMGEAAVAAARAVGYVGAGTVEFIANQDGSFYFMEMNTRLQVEHPVT 300 Query: 301 EMITGLDLVEWQLRVASGEPLPLKQEQLRIQGHAIEARIYAENPEKGFLPSIGTLTRMRS 360 EMITGLDLVEWQLRVA+G+ LPLKQEQLRI GHAIEARIYAENPEKGFLP+IGTLTRMRS Sbjct: 301 EMITGLDLVEWQLRVAAGQALPLKQEQLRIHGHAIEARIYAENPEKGFLPAIGTLTRMRS 360 Query: 361 APAVEFTLAAPGATQPAAVRIDAGVREGDAISPFYDPMIAKLIVWGADRDAALRNMARAL 420 A AVEF L PA VRIDAGVREGDAISPFYDPMIAKLIVWG DRDAALRNM RAL Sbjct: 361 AAAVEFRLGQSAPGDPAHVRIDAGVREGDAISPFYDPMIAKLIVWGPDRDAALRNMQRAL 420 Query: 421 AQYQVVGLATNIGFLQRLIAGEAFSTADLDTGLIERHRDSLFPAAVAPTADTLALATAAL 480 AQYQVVGLATNI FLQRL+AG+AFSTA LDTGLIERHRD+LFP +P +TLALA AA+ Sbjct: 421 AQYQVVGLATNIAFLQRLVAGQAFSTAALDTGLIERHRDTLFPPPSSPDTETLALAIAAI 480 Query: 481 LQQEQRHQDSRDPWAQTSGWRLNTRLQRSLKFEDDSGNSEVRIDYAGDGRQWQLQIGGNT 540 LQQE + DPW+Q +GWRLNTRL R+L+FE D+G++ V++DYAGDG+ W L G T Sbjct: 481 LQQEHAQAERSDPWSQRNGWRLNTRLLRTLRFEHDAGDTTVQLDYAGDGQHWSLLTNGQT 540 Query: 541 HTLALHAANTDSVRISLDGRTLQADVAWEGEGLHLFDGRSQHSLRLLDPMAHAGHAEAEG 600 H L LHAA+ D++ ISLDGRTL+ADV EGE LH+FD QHSLR +DP+AHAGH+EAEG Sbjct: 541 HALQLHAADGDTLIISLDGRTLRADVLREGEWLHVFDAHGQHSLRHVDPLAHAGHSEAEG 600 Query: 601 GRLTAPMPGKIVALLVDQGASVTQGTPLLIMEAMKMEHTIAAPSAGTVEALRYAVGDQVA 660 GRLTAPMPGKIVALLV +GASV GTPLLIMEAMKMEHTIAAP+ G VE L YAVGDQVA Sbjct: 601 GRLTAPMPGKIVALLVQKGASVAHGTPLLIMEAMKMEHTIAAPADGVVEDLLYAVGDQVA 660 Query: 661 EGAQLLDFKAA 671 EGAQLL+FKAA Sbjct: 661 EGAQLLEFKAA 671 >gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 228/472 (48%), Positives = 298/472 (63%), Gaps = 19/472 (4%) Query: 1 MFTKILIANRGEIACRVAATARRLGIATVAVYSDADAQAKHVAACDESVHLGPAPAKESY 60 MF KILIANRGEIA R+ R LGI TV V+S+AD +AK+V DESV +GPAP+ SY Sbjct: 1 MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADREAKYVKLADESVCIGPAPSTLSY 60 Query: 61 LCADKIIAAALATGAQAIHPGYGFLSENAGFAQACADAGLVFIGPPASAIDAMGSKSAAK 120 L II+AA T AQAIHPGYGFLSENA FA+ +G VFIGP A I MG K +AK Sbjct: 61 LNMPAIISAAEVTDAQAIHPGYGFLSENADFAERVEKSGFVFIGPRAENIRMMGDKVSAK 120 Query: 121 ALMEKAAVPLVPGYHGERQES-DFLRAEADRIGYPVLLKASAGGGGKGMRVVERREDFEA 179 M +A VP VPG G ++ + A +IGYPV++KA+ GGGG+GMRVV Sbjct: 121 QAMIRAGVPCVPGSDGALPDNPKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALIN 180 Query: 180 ALASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADGHGNCVYLFERDCSVQRRHQKVL 239 A+ K EA ++FG+ V +EKYL PRH+EIQ+ AD H ++L ERDCS+QRRHQKV+ Sbjct: 181 AVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQKVI 240 Query: 240 EEAPAPGMSCGRRAAMGEAAVAAARAVGYVGAGTVEFIANQDGSFYFMEMNTRLQVEHPV 299 EEAPAPG+ +GE A R + Y GAGT EF+ + FYF+EMNTR+QVEHPV Sbjct: 241 EEAPAPGIPRKIIEKIGERCAEACRKMNYRGAGTFEFLYENE-EFYFIEMNTRVQVEHPV 299 Query: 300 TEMITGLDLVEWQLRVASGEPLPLKQEQLRIQGHAIEARIYAENPEKGFLPSIGTLTRMR 359 TEMITG+D+V+ Q+R+A+GE L +Q + ++GHAIE RI AE+P K F+PS G +T Sbjct: 300 TEMITGVDIVQEQIRIAAGEKLRYRQRDIELKGHAIECRINAEDPFK-FIPSPGRIT--- 355 Query: 360 SAPAVEFTLAAPGATQPAAVRIDAGVREGDAISPFYDPMIAKLIVWGADRDAALRNMARA 419 PG +R+D+ G + P YD M+ K+I +GA R+ A+R M A Sbjct: 356 -------AWHVPGG---PGIRVDSHAYSGYFVPPNYDSMVGKVIAYGATREQAIRRMQIA 405 Query: 420 LAQYQVVGLATNIGFLQRLIAGEAFSTADLDTGLIERHRDSLFPAAVAPTAD 471 L++ V G++TNI + L+ F + +E H+ S PA +P AD Sbjct: 406 LSEMVVEGISTNIPLHRELMVDARFFEGGTNIHYLE-HKLSERPA--SPEAD 454 >gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae SmR1] Length = 462 Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/453 (45%), Positives = 288/453 (63%), Gaps = 15/453 (3%) Query: 4 KILIANRGEIACRVAATARRLGIATVAVYSDADAQAKHVAACDESVHLGPAPAKESYLCA 63 K+LIANRGEIA R+ A+ LGI TVA SDAD + DE +GPA A SYL Sbjct: 7 KLLIANRGEIAVRIIRAAQALGITTVAACSDADTDSLAARMADEVQRIGPARADRSYLNV 66 Query: 64 DKIIAAALATGAQAIHPGYGFLSENAGFAQACADAGLVFIGPPASAIDAMGSKSAAKALM 123 D ++ AA +GA A+HPGYGFLSENA FA+A AGL+F+GP A I MG K+ A+ Sbjct: 67 DALLKAARDSGADALHPGYGFLSENAAFAEAVNAAGLIFVGPQADTIRRMGDKAEARRTA 126 Query: 124 EKAAVPLVPGYHGERQESDFLRAEADRIGYPVLLKASAGGGGKGMRVVERREDFEAALAS 183 A VP+VPG GE ++ A AD IGYP+L+KASAGGGG+G+R+ + Sbjct: 127 AAAGVPVVPGSAGELEDLATALACADEIGYPLLIKASAGGGGRGIRMARDATELAREFPL 186 Query: 184 CKREAISSFGDDRVLVEKYLTRPRHIEIQVFADGHGNCVYLFERDCSVQRRHQKVLEEAP 243 + EA ++FG V +E+++ R RHIE+Q+ DG V+LFER+CS+QRR QKVLEEAP Sbjct: 187 AQAEAQAAFGSAAVYLERFIRRARHIEVQILGDGE-RAVHLFERECSLQRRRQKVLEEAP 245 Query: 244 APGMSCGRRAAMGEAAVAAARAVGYVGAGTVEFI-ANQDGSFYFMEMNTRLQVEHPVTEM 302 +P ++ +R A+ ++AV A + Y GAGT+E++ ++ G F+F+EMNTR+QVEHPVTEM Sbjct: 246 SPALTPAQRQALCDSAVRLAERLHYRGAGTLEYLFDDESGEFFFIEMNTRIQVEHPVTEM 305 Query: 303 ITGLDLVEWQLRVASGEPLPLKQEQLRIQGHAIEARIYAENPEKGFLPSIGTLTRMRSAP 362 ITG+DLV+ LR+A GEPL L+Q +R+QG A+E RI AE+PE+ F P GT+ ++ Sbjct: 306 ITGIDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNFFPCPGTVAELQW-- 363 Query: 363 AVEFTLAAPGATQPAAVRIDAGVREGDAISPFYDPMIAKLIVWGADRDAALRNMARALAQ 422 Q +R+++ + G I P+YD ++AKL+V G DR A+ A+ Sbjct: 364 -----------PQGEGIRVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAVLA 412 Query: 423 YQVVGLATNIGFLQRLIAGEAFSTADLDTGLIE 455 ++ G+AT + Q L+A +A DTG +E Sbjct: 413 TRITGMATTLSLHQWLLADARVQSARFDTGALE 445 >gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/459 (47%), Positives = 289/459 (62%), Gaps = 15/459 (3%) Query: 1 MFTKILIANRGEIACRVAATARRLGIATVAVYSDADAQAKHVAACDESVHLGPAPAKESY 60 MF +LIANRG IACR+ T R L + V VYS+AD + HV D ++ LG PA ++Y Sbjct: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 Query: 61 LCADKIIAAALATGAQAIHPGYGFLSENAGFAQACADAGLVFIGPPASAIDAMGSKSAAK 120 L DKI+AAA +GAQAIHPGYGFLSENA FA+AC AG+ F+GP + + G K A+ Sbjct: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 Query: 121 ALMEKAAVPLVPGYHGERQESDFLRAEADRIGYPVLLKASAGGGGKGMRVVERREDFEAA 180 AL + VP++ G D L A A R+GYPV+LK++AGGGG GMRV + A Sbjct: 121 ALAREQGVPMLEGTDLLESIDDAL-AAASRVGYPVMLKSTAGGGGIGMRVCRSDAELADA 179 Query: 181 LASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADGHGNCVYLFERDCSVQRRHQKVLE 240 S +R ++F D V +EKY+ R RH+E+QVF DG G + L RDCSVQRR+QKVLE Sbjct: 180 FDSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRGEVIALGVRDCSVQRRNQKVLE 239 Query: 241 EAPAPGMSCGRRAAMGEAAVAAARAVGYVGAGTVEFIANQ-DGSFYFMEMNTRLQVEHPV 299 E PAP + G A+ AA+ A+AV Y AGTVEF+ + G FYF+E+NTRLQVEH V Sbjct: 240 ETPAPNLPDGMAEALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGV 299 Query: 300 TEMITGLDLVEWQLRVASGEPLPLKQ--EQLRIQGHAIEARIYAENPEKGFLPSIGTLTR 357 TE + G+DLV W + +A+G+ PL Q L+ +GHAI+AR+YAE+P + F P G LT Sbjct: 300 TEQVWGVDLVRWMIELAAGDLPPLAQLAAGLQPRGHAIQARLYAEDPGRQFQPCPGLLT- 358 Query: 358 MRSAPAVEFTLAAPGATQPAAVRIDAGVREGDAISPFYDPMIAKLIVWGADRDAALRNMA 417 AV+F P Q A+RID V G I+P++DPMIAKLI W R+AA + Sbjct: 359 -----AVDFP---PVDGQ--ALRIDTWVEAGCEIAPYFDPMIAKLISWQPTREAARLALD 408 Query: 418 RALAQYQVVGLATNIGFLQRLIAGEAFSTADLDTGLIER 456 AL + G+ TN +L++++A F++ T +E+ Sbjct: 409 AALRATLLYGVETNQHYLRQILADVPFASGQPWTRCLEQ 447 >gi|300310711|ref|YP_003774803.1| carbamoyl-phosphate synthase large subunit [Herbaspirillum seropedicae SmR1] Length = 1077 Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 18/225 (8%) Query: 102 FIGPPASAIDAMGSKSAAKALMEKAAVPLVPGYHGERQESDFLRAEADRIGYPVLLKASA 161 IG AID +S K M K + L G + A IG+PV+++ S Sbjct: 115 LIGATPEAIDKAEDRSKFKEAMTK--IGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSF 172 Query: 162 GGGGKGMRVVERREDFEAALASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADGHGNC 221 GG G + E+FE CKR + + +L+E+ L + E++V D NC Sbjct: 173 TMGGTGGGIAYNAEEFETI---CKR-GLEASPTSELLIEESLIGWKEYEMEVVRDKADNC 228 Query: 222 VYLFERDCSVQR------RHQKVLEEAPAPGMSCGRRAAMGEAAVAAARAVGY-VGAGTV 274 + + CS++ + APA ++ M A++A R +G G V Sbjct: 229 IIV----CSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNV 284 Query: 275 EFIANQ-DGSFYFMEMNTRLQVEHPVTEMITGLDLVEWQLRVASG 318 +F N DG +EMN R+ + TG + + ++A G Sbjct: 285 QFSVNPADGRMIVIEMNPRVSRSSALASKATGFPIAKIAAKLAVG 329 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,938,877 Number of extensions: 77393 Number of successful extensions: 330 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 6 Length of query: 671 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 579 Effective length of database: 1,184,250 Effective search space: 685680750 Effective search space used: 685680750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)