BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0046.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313974|ref|YP_003778066.1| beta-lactamase [Herbaspirillum ...   534   e-153

>gi|300313974|ref|YP_003778066.1| beta-lactamase [Herbaspirillum
           seropedicae SmR1]
          Length = 309

 Score =  534 bits (1375), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 260/309 (84%), Positives = 278/309 (89%)

Query: 1   VNTSALRLPPSLHVLERGWLSSNNVLLFGRDEVAMIDSGYVAHAEQTQTLVRHVLHQRGR 60
           +N  AL +  S+HVLERGWLSSNNVLLFGRDEVAMIDSGYV HAEQT+TLVRHVL QRGR
Sbjct: 1   MNAPALHIAASIHVLERGWLSSNNVLLFGRDEVAMIDSGYVTHAEQTRTLVRHVLAQRGR 60

Query: 61  ERLDVLLNTHLHSDHCGGNAALHAAYGCRIAIPAAEDAKVRQWDEDALSYRATGQRCPRF 120
            RLD+L+NTHLHSDHCGGNAAL   + CRIAIPAAE+ KVR WDEDALSYRATGQRC RF
Sbjct: 61  PRLDLLVNTHLHSDHCGGNAALQQEHHCRIAIPAAEEEKVRHWDEDALSYRATGQRCARF 120

Query: 121 THDQVIRSGDVLRLGDLDWTALAAPGHDPHALLLYCAQEGVLISADALWRNGFGIIFPEL 180
           T  Q +RSG+VLR+G+LDW  LAAPGHDPHALL YCAQEGVL+SADALWRNGFGIIFPEL
Sbjct: 121 TATQTLRSGEVLRMGELDWQVLAAPGHDPHALLFYCAQEGVLVSADALWRNGFGIIFPEL 180

Query: 181 DGESGFEEARATLELIRSLDVRTVIPGHGAPFTEVDDALEKAFSRLDYLQADPLRNAHNG 240
           DG+SGF EARATLELIRSL+VRTVIPGHGAPFTEVDDALEKAFSRLDYLQADP RNAHNG
Sbjct: 181 DGQSGFAEARATLELIRSLEVRTVIPGHGAPFTEVDDALEKAFSRLDYLQADPRRNAHNG 240

Query: 241 IKVLVKFLLLERGRIALADLPTMMREIPLLRITNARFLQMEDAALADWCVAQLQKAGAAA 300
           IKVLVKFLL+ERGRIAL  LP MMREIPLLRITN R LQM+D ALA WCVAQL+KAGAA 
Sbjct: 241 IKVLVKFLLMERGRIALEQLPAMMREIPLLRITNERHLQMDDLALARWCVAQLEKAGAAQ 300

Query: 301 SDGVFLLDR 309
           SDGVFLLDR
Sbjct: 301 SDGVFLLDR 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,041,711
Number of extensions: 45670
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)