BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0038.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313979|ref|YP_003778071.1| major facilitator superfamily p...   550   e-158
gi|300310361|ref|YP_003774453.1| major facilitator superfamily p...   105   5e-24

>gi|300313979|ref|YP_003778071.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  550 bits (1417), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 327/387 (84%), Positives = 351/387 (90%), Gaps = 3/387 (0%)

Query: 1   MTTKLSTSRPSSPLR-LIWRKLAIPLFFLLLGVVFATWAARIPAIRDHLQLDAATLALVL 59
           MTTK     P+ P     WRK+AIP  FLLLGVVF+TWAARIPAIRD LQLDAATLALVL
Sbjct: 16  MTTKHCI--PALPQNHQAWRKIAIPFLFLLLGVVFSTWAARIPAIRDQLQLDAATLALVL 73

Query: 60  LCGGIGAVGSFPLAAWITGHYGARHSTLYAGLALLVSLPLLGLAPNVASLMLICTLYGAA 119
           LCGGIGAVGSFPLAAWITGHYGARHS+LYAGL LL+SLPLL LAP + +LM +CTLYGAA
Sbjct: 74  LCGGIGAVGSFPLAAWITGHYGARHSSLYAGLVLLLSLPLLALAPGLWTLMAVCTLYGAA 133

Query: 120 SSCFDVAINALGAQAERDAGRPIMSMLHGWFCVGTFSGALAASAVAGMGIAPIWHFLLVA 179
           SSCFDVAINALGAQAER+AGRPIMSMLHGWFCVGTFSGAL ASAVAG+G+AP+WHFLL A
Sbjct: 134 SSCFDVAINALGAQAEREAGRPIMSMLHGWFCVGTFSGALVASAVAGLGVAPLWHFLLAA 193

Query: 180 ALFLYPLYACYEALPDDRPEHDPARKLFVLPHGHLVVLGVIAFCGAIVEGSVADWSGIYM 239
           AL  +PLYA  +ALPDDRP++DP R+LF LPHGHLVVLGVIAFCGAIVEGSVADWSGIYM
Sbjct: 194 ALLAWPLYAGCQALPDDRPQYDPQRQLFALPHGHLVVLGVIAFCGAIVEGSVADWSGIYM 253

Query: 240 KDHIGASDGATPLAYAAFAGMMLIMRMIGDRLKARYDARRVVWVGTLIASLGIALAVAAP 299
           KDHIGASDGATPLAYAAFAGMML+MRM+GD LKARYDARRVV +GTL+A+ G+ALAV A 
Sbjct: 254 KDHIGASDGATPLAYAAFAGMMLVMRMVGDGLKARYDARRVVSIGTLVATGGMALAVTAQ 313

Query: 300 GMTLAILGFAIAGTGVAAVFPFVFSAAGRHGSSALAAVATLGYSGSLIGPPVFGFLAHGW 359
           GMT AILGFAIAG GVAAVFPFVFSAAGRHGS+ALAAVATLGYSGSLIGPPVFGFLAHGW
Sbjct: 314 GMTPAILGFAIAGAGVAAVFPFVFSAAGRHGSTALAAVATLGYSGSLIGPPVFGFLAHGW 373

Query: 360 GLQAALALLGVLCLAMAGSSRRAQWLQ 386
           GLQAALALLG LCLAMA SSRRAQWLQ
Sbjct: 374 GLQAALALLGALCLAMALSSRRAQWLQ 400


>gi|300310361|ref|YP_003774453.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 176/356 (49%), Gaps = 23/356 (6%)

Query: 27  FLLLGVVFATWAARIPAIRDHLQLDAATLALVLLCGGIGAVGSFPLAAWITGHYGARHST 86
           F + G  FATW   IP++++   L  A L+L +L    GA+ +   +       G+  + 
Sbjct: 27  FFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSARAL 86

Query: 87  LYAGLALLVSLPLLGLAPNVASLMLICTLYGAASSCFDVAINALGAQAERDAGRPIMSML 146
              G+    +L L+ LAP    L+L+  ++G+A + FDVA++   A  E    RPIMS L
Sbjct: 87  RQVGILYAATLLLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAALVEGQRTRPIMSTL 146

Query: 147 HGWFCVGTFSGALAASAVAGMGIAPIWHFLLVAALFL-YPLYACYEALPDDRPEHDPARK 205
           H  F +G  +GA   +     G++P+ H  LV  + L   L     ALPD+   HD A  
Sbjct: 147 HAMFSIGGIAGAALGAVP---GLSPLAHAALVGVVTLAVSLSIGPFALPDE--VHDSAAT 201

Query: 206 LFVLPHG-------HLVVLGVIAFCGAIVEGSVADWSGIYMKDHIGASDGATPLAYAAFA 258
               PHG        ++VLG IAF   + EG + DW+ +YM+D   +       +YAAF+
Sbjct: 202 ----PHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSPMAWVSYSYAAFS 257

Query: 259 GMMLIMRMIGDRLKARYDARRVVWVGTLIASLGIALAVAAPGMTLAILGFAIAGTGVAAV 318
             M   R+ GDR++AR    R +       + GIALA A P     + G  ++G G+A +
Sbjct: 258 TGMAAGRLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGLGIANL 317

Query: 319 FPFVFSAAGR----HGSSALAAVATLGYSGSLIGPPVFGFLAHGWGLQAALALLGV 370
            P  F AA R      + ++AAVA   Y G L+GP   G +A   GL+  L+ +GV
Sbjct: 318 MPIFFLAAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLGLR--LSFVGV 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,177
Number of extensions: 41298
Number of successful extensions: 322
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)