BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0035.p
         (325 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313981|ref|YP_003778073.1| major facilitator superfamily p...   411   e-116

>gi|300313981|ref|YP_003778073.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  411 bits (1057), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 278/315 (88%), Positives = 289/315 (91%)

Query: 1   VLIAGAFATALLSFLPALTTDTLLQLLLRIVTGVTSALIFVSGGLLVSRLAALHAQRAGL 60
           VLIAGAFATALLSFLPALTTDTLLQLLLR+VTGV+SALIFVSGGLLVSRLAA+H  RAGL
Sbjct: 87  VLIAGAFATALLSFLPALTTDTLLQLLLRVVTGVSSALIFVSGGLLVSRLAAMHGHRAGL 146

Query: 61  LLGLYYGGTGIGIVAASLLVPPVMEAAAARGAPHPWQWAWILLGVLALLASLVMTLPARL 120
           LLGLYYGGTG+GIVAASLLVPPVM AA A GA HPWQWAW+LLG LAL ASLVM  PARL
Sbjct: 147 LLGLYYGGTGLGIVAASLLVPPVMAAALAHGAAHPWQWAWLLLGTLALAASLVMAGPARL 206

Query: 121 MPTSPAQAAGGGAWRPRSLLFGLTGYLFFGLGYIGYMTFVIALLKEEGMAPARITLFFAL 180
           MPT+ A   G G W+ RSLLFGL GYLFFGLGYIGYMTFVIALLKEEGM   RITLFFAL
Sbjct: 207 MPTTAAHVQGNGRWQARSLLFGLIGYLFFGLGYIGYMTFVIALLKEEGMPAERITLFFAL 266

Query: 181 LGAATFASSRIWARMLDRFQGGQSLAILNGLLCLATLLPAMTAAPVAVFASGLLFGGCFL 240
           LGAATFASSRIWARMLDRF+GGQSLAILNGLL LATLLPA+TA PVAVFASGLLFGGCFL
Sbjct: 267 LGAATFASSRIWARMLDRFRGGQSLAILNGLLALATLLPALTAEPVAVFASGLLFGGCFL 326

Query: 241 SAVASTTAMVRHNLPPSDWPAGISAFTIIFAVGQIIGPSIVGWIADGAGGLQRGLTFSAL 300
           SAVASTTAMVRHNLPP  WPAGISAFTIIFAVGQIIGP+IVGWIADGAGGLQRGL+FSAL
Sbjct: 327 SAVASTTAMVRHNLPPHHWPAGISAFTIIFAVGQIIGPTIVGWIADGAGGLQRGLSFSAL 386

Query: 301 MLLAGALVAWRQRPL 315
           MLLAGAL AWRQRPL
Sbjct: 387 MLLAGALTAWRQRPL 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,947
Number of extensions: 28502
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 240
Effective length of database: 1,217,395
Effective search space: 292174800
Effective search space used: 292174800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)