BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0034.p (360 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans... 674 0.0 gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans... 129 3e-31 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 74 2e-14 >gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/360 (93%), Positives = 347/360 (96%) Query: 1 MSKFWSPIVSRLTPYTPGEQPKIARLVKLNTNESPYGPSPLALQAIAREVSDNLRLYPNP 60 MSKFWSPIVSRLTPYTPGEQPKIARLVKLNTNESPYGPSPLALQAIAREVSD+LRLYPNP Sbjct: 1 MSKFWSPIVSRLTPYTPGEQPKIARLVKLNTNESPYGPSPLALQAIAREVSDSLRLYPNP 60 Query: 61 DAEPLKLAIARRHAADGISAREVFVGNGSDEVLAHAFQALLQHGKPILFPDITYSFYPTY 120 DAEPLK AIARRHAADG+S REVFVGNGSDEVLAHAF ALLQHGKPILFPDITYSFYPTY Sbjct: 61 DAEPLKQAIARRHAADGVSVREVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTY 120 Query: 121 AGLYQVDYRAVPLAEDFTLRTEDYLGHGDAIGGIIFPNPNAPTGCLLGLDEVERILQGNP 180 AGLYQV+YRAVPLAEDFTLR+EDYLGHG AIGGIIFPNPNAPTGCLLGL +VERILQGNP Sbjct: 121 AGLYQVEYRAVPLAEDFTLRSEDYLGHGQAIGGIIFPNPNAPTGCLLGLADVERILQGNP 180 Query: 181 ERVVVVDEAYIDFGGESAIPLVQRYPNLLVVQTFSKSRALAGMRVGFAVGHADLIDALER 240 ERVVVVDEAYIDFGG+SAIPLVQRYPNLLVVQT SKSRALAGMRVGFAVGHADLIDALER Sbjct: 181 ERVVVVDEAYIDFGGQSAIPLVQRYPNLLVVQTLSKSRALAGMRVGFAVGHADLIDALER 240 Query: 241 VKNSFNSYPLDRPAIAGATAAIEDEDYFRKTCDMVIASRTALVAQLEALGFEVLPSAANF 300 VKNSFNSYPLDRPAIAGATAAIEDEDYFRKTC+MVIASRTAL AQL LGF+VLPSAANF Sbjct: 241 VKNSFNSYPLDRPAIAGATAAIEDEDYFRKTCNMVIASRTALAAQLAGLGFQVLPSAANF 300 Query: 301 VFARHPQRDAAELAAALRSDGIIVRHFKSERIKQFLRITIGTDEDCGTLVEALRRHLGQQ 360 +F RHPQ DAA+LAAALR+DGIIVRHFKSERI QFLRITIGTDEDCG LVEALRRHLGQQ Sbjct: 301 LFVRHPQHDAAQLAAALRADGIIVRHFKSERISQFLRITIGTDEDCGVLVEALRRHLGQQ 360 >gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 129 bits (324), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 185/362 (51%), Gaps = 21/362 (5%) Query: 8 IVSRLTPYTPGEQ----PKIARLVKLNTNESPYG-PSPLALQAIAREVSDNLRLYPNPDA 62 I + + P G Q P +VKL+ E+PY P+ L Q R + L YP P Sbjct: 17 IANVIRPVVRGWQSYHVPSAEGMVKLDAMENPYLLPAELREQLAQRLAALELNRYPVPSY 76 Query: 63 EPLKLAIARRHAADGISA-REVFVGNGSDEVLAHAFQALLQHGKPILFPDITYSFYPTYA 121 LK AI + G+ A +V +GNGSDE++ A Q G+ IL P+ + Y A Sbjct: 77 TALKAAICK---GLGVPAGYDVLLGNGSDELITLLSVACAQPGRTILAPEPGFVMYGVSA 133 Query: 122 GLYQVDYRAVPLAEDFTLRTEDYLGHGDAIGGII--FPNPNAPTGCLLGLDEVERILQ-G 178 + ++Y VPL D +L L +A +I PN PTG L + +V RI++ Sbjct: 134 KMAGLEYVGVPLCADLSLDLPAMLAAMEAHKPVITWLGYPNNPTGTLYEMADVLRIVEAA 193 Query: 179 NPERVVVVDEAYIDFGGESAIPLVQRYPNLLVVQTFSKSRALAGMRVGFAVGHADLIDAL 238 P +VVVDEAY F + +P + ++ NL++++T SK LAG+R+G+ L+ L Sbjct: 194 APYGLVVVDEAYQPFAASTLMPALPQHNNLVLMRTVSK-LGLAGIRLGYLSAAPALLREL 252 Query: 239 ERVKNSFNSYPLDRPAIAGATAAIEDEDYFRKTCDMVIASRTALVAQLEAL-GFEVLPSA 297 ++V+ +N L A A +E D + + +R+AL A+L AL G +V PSA Sbjct: 253 DKVRPPYNVNVLTE---AAALFMLEHLDVLQAQAARLRQARSALAAELAALDGVQVFPSA 309 Query: 298 ANFVFARHPQRDAAELAAALRSDGIIVRHFKSERI--KQFLRITIGTDEDCGTLVEALRR 355 ANF+ R P DA ++ A+L + ++V++ + + LRIT+ +D++ + AL+ Sbjct: 310 ANFLLIRVP--DADKVCASLLAHRVLVKNAGRMHVLLQNCLRITVSSDKENAMFLAALKT 367 Query: 356 HL 357 L Sbjct: 368 AL 369 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 121/260 (46%), Gaps = 19/260 (7%) Query: 65 LKLAIAR----RHAADGISAREVFVGNGSDEVLAHAFQALLQHGKPILFPDITYSFYPTY 120 L+ AIA R+ D E V GS E LAH A L G +L P+ +Y + Sbjct: 110 LRRAIAHWYRSRYEVDFDPDSEAIVTIGSKEGLAHLMLATLDKGDTVLVPNPSYPIHIYG 169 Query: 121 AGLYQVDYRAVPLAE--DFTLRTEDYLGHG-DAIGGIIFPNPNAPTGCLLGLDEVERILQ 177 A + + R+V ++ DF E + +I P+ PT + L+ ER+++ Sbjct: 170 AVIAGANIRSVRMSPGVDFFDELERAVRESYPKPKMMILGFPSNPTAQCVELEFFERVVK 229 Query: 178 GNPER--VVVVDEAYID--FGGESAIPLVQRYPNLLVVQ----TFSKSRALAGMRVGFAV 229 E +VV D AY D F G A P + + P V T SKS +AG R+GF V Sbjct: 230 LAREHQILVVHDLAYADITFDGWKA-PSIMQVPGAREVAVEFFTLSKSYNMAGWRIGFMV 288 Query: 230 GHADLIDALERVKNSFNSYPLDRPAIAGATAAIE-DEDYFRKTCDMVIASRTALVAQLEA 288 G+A L+ AL R+K S++ Y P A AA+E D+ + R LV L Sbjct: 289 GNARLVAALARIK-SYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYERRRNVLVKGLHE 347 Query: 289 LGFEV-LPSAANFVFARHPQ 307 G+ V +P A+ +++AR P+ Sbjct: 348 AGWMVDVPKASMYIWARIPE 367 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,204,103 Number of extensions: 54138 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 4 Length of query: 360 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 274 Effective length of database: 1,212,660 Effective search space: 332268840 Effective search space used: 332268840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)