BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0032.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding prote...   436   e-124
gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding prote...   204   6e-54

>gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  436 bits (1122), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/224 (95%), Positives = 218/224 (97%)

Query: 19  MAQLLQQYDWFAALAAEHRALVAATTQLTRFSADAFVARRGELSQYWIGVHEGLIKLAVY 78
           MAQLLQQYDWFAALA+EHRAL AATTQ  R++ADAFVARRGELSQYWIGVHEGLIKLAVY
Sbjct: 1   MAQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVY 60

Query: 79  NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRVSQILLVPADTFHRLMAESLPFN 138
           NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIR SQILLVPADTFH LMAESLPFN
Sbjct: 61  NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFN 120

Query: 139 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 198
           AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL
Sbjct: 121 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 180

Query: 199 TGLSRQRVNQAMRHLAELGLVEISYQSIRVVDLDGLRAFGMASL 242
           TGLSRQRVNQAMR LAELGLVEISYQSIRVVDLDGLRAFGMASL
Sbjct: 181 TGLSRQRVNQAMRRLAELGLVEISYQSIRVVDLDGLRAFGMASL 224


>gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score =  204 bits (519), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 97/223 (43%), Positives = 151/223 (67%)

Query: 15  MSSPMAQLLQQYDWFAALAAEHRALVAATTQLTRFSADAFVARRGELSQYWIGVHEGLIK 74
           M + + ++L +  W  AL  E  A V       +  A  +V R+G+   +WIGVHEGL+K
Sbjct: 1   METSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLK 60

Query: 75  LAVYNIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRVSQILLVPADTFHRLMAES 134
           ++  + +G++ + +G+  GGW GEGS++K EPR+YDV+A+R S++L +P  T+  L+  S
Sbjct: 61  MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNS 120

Query: 135 LPFNAFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEE 194
           +PFN F++ QLNER+  FI+ V+ +R+L+ DARVA+ +A LF+P L P     L++SQEE
Sbjct: 121 IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE 180

Query: 195 IGLLTGLSRQRVNQAMRHLAELGLVEISYQSIRVVDLDGLRAF 237
           +G L+G SRQR NQA++ L + GL+++ Y SI + DL+GLR F
Sbjct: 181 VGNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 672,376
Number of extensions: 25506
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)