BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0029.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313988|ref|YP_003778080.1| Na+-dependent transporter prote...   591   e-170

>gi|300313988|ref|YP_003778080.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  591 bits (1524), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 302/304 (99%), Positives = 304/304 (100%)

Query: 32  MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 91
           MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR
Sbjct: 1   MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 60

Query: 92  PAPVAAGIILHYLVMPLAAWVIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 151
           PAPVAAGIILHYLVMPLAAW+IAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA
Sbjct: 61  PAPVAAGIILHYLVMPLAAWIIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 120

Query: 152 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 211
           LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK
Sbjct: 121 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 180

Query: 212 LIRRIEPYLSLVSMVAILLIISAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 271
           LIRRIEPYLSLVSMVAILLII+AVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL
Sbjct: 181 LIRRIEPYLSLVSMVAILLIIAAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 240

Query: 272 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 331
           LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR
Sbjct: 241 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 300

Query: 332 PPRD 335
           PPRD
Sbjct: 301 PPRD 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 910,798
Number of extensions: 33488
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)