BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0027.p (525 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 1022 0.0 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 327 1e-90 gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 221 1e-58 gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 216 3e-57 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 84 2e-17 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/507 (99%), Positives = 507/507 (100%) Query: 1 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE Sbjct: 1 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60 Query: 61 GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120 GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA Sbjct: 61 GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120 Query: 121 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK 180 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK Sbjct: 121 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK 180 Query: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW Sbjct: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 Query: 241 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY 300 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY Sbjct: 241 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY 300 Query: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGA 360 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLID+LNFKIPAGAIVGIIGPNGA Sbjct: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGA 360 Query: 361 GKSTLFRMLAGRETPDSGELVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF 420 GKSTLFRMLAGRETPDSGE+VLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF Sbjct: 361 GKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF 420 Query: 421 EMPSRAYLGRFNFKGGDQQKVVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 EMPSRAYLGRFNFKGGDQQK+VGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL Sbjct: 421 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 Query: 481 RALEDALLEFAGTVLVISHDRWFLDRV 507 RALEDALLEFAGTVLVISHDRWFLDR+ Sbjct: 481 RALEDALLEFAGTVLVISHDRWFLDRI 507 Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 38/244 (15%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEP 78 R ++ D++ GA +G++G NG+GKSTL +++AG + GE + P + + + Q Sbjct: 336 RLLIDDLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSR 395 Query: 79 Q-LDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADG 137 + L +KTV ++V G + + AY F+ +Q ++ Sbjct: 396 EDLGNKKTVFEDVSG--GADILTVGRFEMPSRAYL---GRFNFKGGDQQKI--------- 441 Query: 138 NSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAES 197 +G LSGGE+ R+ L K LL ++LLLDEP+N LD E+ Sbjct: 442 ----------------------VGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVET 479 Query: 198 VDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIP-WKGNYSSWLEQKEARLK 256 + LE L F GTV+ I+HDR+FLD A I+ + + + GNY + K+ RL Sbjct: 480 LRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYEADKKKRLG 539 Query: 257 QEEA 260 +E A Sbjct: 540 EEAA 543 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 327 bits (839), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 195/496 (39%), Positives = 290/496 (58%), Gaps = 5/496 (1%) Query: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEPQL 80 +L S G +IG++G NG+GKS+LLKI+AG K +G + NL I Y+ QEP Sbjct: 18 LLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVMQQNLKIAYVDQEPHF 77 Query: 81 DAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGNSL 140 E TV V S LGE+ A+ +A+ + ++ D AL +++ ++ AAD S+ Sbjct: 78 PEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDD--ALLERMHQIQTVLDAADAWSI 135 Query: 141 NQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVDW 200 ++E D L L DA+IG LSGG K+RVAL L+ PD+LLLDEPTNHLD S+ W Sbjct: 136 GNKVETTLDKLNLNR-DARIGELSGGMKKRVALACGLVGNPDVLLLDEPTNHLDFGSILW 194 Query: 201 LEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARLKQEEA 260 LE L+ F G+++ ITHDR FLDN + I+ELDRG + + GN++++ +K L EE Sbjct: 195 LEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGNFTTYQTRKAELLANEEV 254 Query: 261 SESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEYEYQKRNETQEIFIPVA--ER 318 + K +A+E W+R+ + R+ + + R+ R L ++R ++ + V ER Sbjct: 255 ENAKFDKFLAQEEVWIRKGVQARRTRDEGRVRRLEALRVQRSERRERQGQVKLEVGTGER 314 Query: 319 LGNEVIEFKNVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSG 378 G V E +NV+K YG + ++ + + + G VG+IG NGAGK+TL +++ G E PDSG Sbjct: 315 SGKIVAELENVNKAYGPKTIVRDFSTILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSG 374 Query: 379 ELVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRFEMPSRAYLGRFNFKGGDQ 438 + G ++V+ DQ R L + T+ + ++ G+D + V YL F F Sbjct: 375 TVKQGTKMQVAYFDQMRAQLNEETTLADTIAPGSDWVEVNGQRKHVMTYLSDFLFAPERA 434 Query: 439 QKVVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEFAGTVLVIS 498 + V LSGGER RL LA+ + NVL+LDEP+NDLD++TL LE+ L E+ GTV ++S Sbjct: 435 RSPVRTLSGGERNRLLLARLFAKPANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVS 494 Query: 499 HDRWFLDRVQRRFFSS 514 HDR FLD V + +S Sbjct: 495 HDRMFLDNVVTQVIAS 510 Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 107/233 (45%), Gaps = 54/233 (23%) Query: 323 VIEFKNVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSGELVL 382 VI + +G L+D+ F + G +G+IG NG GKS+L +++AGR D G LV+ Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 383 GPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRFEMPS-----RAYLGRFNFKGGD 437 +K++ VDQ + TVF+ V+ G E+P+ A G+F GGD Sbjct: 63 QQNLKIAYVDQEPH-FPEEMTVFDAVASGLG-------ELPALLAEYEAITGQF---GGD 111 Query: 438 QQKV--------------------------------------VGNLSGGERGRLHLAKTL 459 +G LSGG + R+ LA L Sbjct: 112 NDDALLERMHQIQTVLDAADAWSIGNKVETTLDKLNLNRDARIGELSGGMKKRVALACGL 171 Query: 460 LQGGNVLLLDEPSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRVQRRFF 512 + +VLLLDEP+N LD ++ LE L +F G++L I+HDR FLD V R Sbjct: 172 VGNPDVLLLDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRII 224 Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 120/283 (42%), Gaps = 73/283 (25%) Query: 3 QYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGE 62 + V + V K PK I++D S G K+G++G NG+GK+TLLK++ G + G Sbjct: 317 KIVAELENVNKAYGPK-TIVRDFSTILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSGT 375 Query: 63 AIPMPNLNIGYLPQ-EPQLDAEKTVRQEVESALGEV-FEAQAKLDAVYAAYAEEDADFDA 120 + + Y Q QL+ E T+ + V Q K Y + DF Sbjct: 376 VKQGTKMQVAYFDQMRAQLNEETTLADTIAPGSDWVEVNGQRKHVMTYLS------DF-L 428 Query: 121 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK 180 A E+AR + + LSGGE+ R+ L +L Sbjct: 429 FAPERAR------------------------------SPVRTLSGGERNRLLLARLFAKP 458 Query: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 ++L+LDEPTN LD ++++ LE+ L+ + GTV ++HDR FLDN ++ G+G+ W Sbjct: 459 ANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQVIA-SEGNGV-W 516 Query: 241 K---GNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNP 280 + G YS +W RQ P Sbjct: 517 REYVGGYS----------------------------DWERQRP 531 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 221 bits (562), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 171/527 (32%), Positives = 263/527 (49%), Gaps = 65/527 (12%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEP 78 + + ++IS+ F G + G++G NG GKST +KI+ G + G N +G L Q+ Sbjct: 14 KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDVNERLGKLRQDQ 73 Query: 79 QLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGN 138 E V V E++ A ++ DA+YA D D+ + A LEA A DG Sbjct: 74 FAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDY----MKAADLEAKFAEYDGY 129 Query: 139 SLNQQLEMAADALRLP---PWDAKIGVLSG---GEKRRVALCKLLLSKPDMLLLDEPTNH 192 + E A L L P + G +S G K RV L + L S PD+LLLDEPTN+ Sbjct: 130 TA----EARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNN 185 Query: 193 LDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSW-LEQK 251 LD ++ WLE+ L T++ I+HDR+FL+ + ++D G + GNY + L Sbjct: 186 LDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASS 245 Query: 252 EARLKQEEASESARQKTIAKELEWVRQ----NPKGRQAKSKAR------------LARFN 295 +AR +Q A+ A++K +A+ ++VR+ K RQA S+A+ +R N Sbjct: 246 QARAQQLAANAKAKEK-VAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRVN 304 Query: 296 ELSEYEYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDNLNFKIPAGAIVGII 355 +E +K +L +E + ++K Y DR + N + + AG + II Sbjct: 305 PFIRFEGEK-------------KLHRLAVETQGITKTY-DRDIFKNFSIMVEAGEKIAII 350 Query: 356 GPNGAGKSTLFRMLAGRET---PDSGELVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGA 412 G NGAGK+TL R + G T PD G + V + Q E+ +GG Sbjct: 351 GANGAGKTTLLRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPT---------EEFAGGE 401 Query: 413 DILT-VGRF------EMPSRAYLGRFNFKGGDQQKVVGNLSGGERGRLHLAKTLLQGGNV 465 + +G++ + R LGR F G D +K V LSGGE+GR+ K +L NV Sbjct: 402 TLTDWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNV 461 Query: 466 LLLDEPSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRVQRRFF 512 LL+DEP+N +D+E++ +L AL ++AGT++ +SHDR F+ + R Sbjct: 462 LLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRIL 508 Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 40/233 (17%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE---GEAIPMPNLNIGYLP 75 R I K+ S+ G KI ++G NG+GK+TLL+ + G + G N N+GY+P Sbjct: 331 RDIFKNFSIMVEAGEKIAIIGANGAGKTTLLRSIGGDVTGLHPDGGLVKWAENANVGYMP 390 Query: 76 QEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAA 135 Q+P E F L + +E D A+ RL Sbjct: 391 QDPT----------------EEFAGGETLTDWMGKWTQEGDDDQAVRGILGRL-----LF 429 Query: 136 DGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDA 195 G+ + + ++ VLSGGEK R+ KL+L + ++LL+DEPTNH+D Sbjct: 430 SGDDVKKSVK----------------VLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDM 473 Query: 196 ESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWL 248 ES++ L L+++ GT++ ++HDR F+ + A ILE+ G I ++G Y +L Sbjct: 474 ESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGGYEDYL 526 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 216 bits (550), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 165/533 (30%), Positives = 269/533 (50%), Gaps = 56/533 (10%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQE- 77 + +L+++ L+ PG KIG++G NG+GKS+L ++ G +G + Y+ QE Sbjct: 14 KPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDFPARWRMAYVAQET 73 Query: 78 PQLDAEKTVRQEVESALGEVFEAQAKLDAVYA--AYAEEDADFDALATEQARLEAIIAAA 135 P LD R +E A+ + A L + A A AE D A L +A A Sbjct: 74 PALD-----RPAIEYAI----DGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTALADA 124 Query: 136 DGNSLNQQLE--MAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHL 193 D ++ + E + L + + SGG + R+ L + L+ D+LLLDEPTNHL Sbjct: 125 DAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL 184 Query: 194 DAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEA 253 D +++ WLE +L+R+ GT++ I+HDR FLD I+ +D + GNYS++ Q+ A Sbjct: 185 DLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFERQRSA 244 Query: 254 RLKQEEASESARQKTIAKELEWV----RQNPKGRQAKSKAR-LARFNEL------SEYEY 302 +L+ +Q+ A ++ + K RQA+S+ + L++ EL +E+ + Sbjct: 245 QLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAAEFSF 304 Query: 303 QKRNETQEIFIPVAERLGNEVIEFKNVSKGYG----------DRLLIDNLNFKIPAGAIV 352 + R P++ N ++ + V+ GY D++++ ++F + G + Sbjct: 305 EFRE-------PLSA--PNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRI 355 Query: 353 GIIGPNGAGKSTLFRMLAGRETPDSGELVLGPTVKVSLVDQSREDL--GNKKTVFEDVSG 410 G++G NGAGKSTL + +AG P SG LG + + Q + ++ ++ ++ Sbjct: 356 GLLGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRL 415 Query: 411 GADILTVGRFEMPSRAYLGRFNFKGGDQQKVVGNLSGGERGRLHLAKTLLQGGNVLLLDE 470 D+ E R +LG FNF G + SGGE+ RL LA + Q N+LLLDE Sbjct: 416 APDVR-----EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDE 470 Query: 471 PSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRVQRRFFSSVQWIVSGGK 523 P+N LD+ET AL AL +F GT++++SHDR L +F IV+ GK Sbjct: 471 PTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFL-----IVAEGK 518 Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 158 AKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITH 217 + I SGGEK R+AL ++ +P++LLLDEPTNHLD E+ + L L +F GT+V ++H Sbjct: 440 SSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALTMALAQFEGTLVLVSH 499 Query: 218 DRYFLDNAAEWILELDRGHGIPWKG---NYSSWL 248 DR+ L + L + G P+ G +Y WL Sbjct: 500 DRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWL 533 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 12/188 (6%) Query: 324 IEFKNVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSGEL--- 380 + F NV+K +GD +I+ +I +G +V ++GP+G GKSTL M AG E P SG + Sbjct: 3 LSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGD 62 Query: 381 ---VLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRFEMPSRAYLGRFNFK-GG 436 + GP + +L+ Q L T+ ++V+ + +V + + +A + N K G Sbjct: 63 GQTIRGPHPERTLMFQENA-LYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKG 121 Query: 437 DQQKVVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEF----AG 492 + +SGG R R LA+ + LLLDEP LD T L+DAL + Sbjct: 122 FEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGP 181 Query: 493 TVLVISHD 500 TV++++HD Sbjct: 182 TVVLVTHD 189 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,510,566 Number of extensions: 60443 Number of successful extensions: 787 Number of sequences better than 1.0e-08: 82 Number of HSP's gapped: 706 Number of HSP's successfully gapped: 109 Length of query: 525 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 435 Effective length of database: 1,193,720 Effective search space: 519268200 Effective search space used: 519268200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)