BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0022.p
         (380 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313992|ref|YP_003778084.1| extracellular solute-binding, f...   541   e-155
gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasm...    72   8e-14

>gi|300313992|ref|YP_003778084.1| extracellular solute-binding,
           family 1 protein [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score =  541 bits (1393), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/380 (72%), Positives = 316/380 (83%)

Query: 1   VADAFSLKHPEVRINLQFMIGNSVEENLKPRAATDSLPDIVSVNASPYTATLADQGLLAD 60
           V D F  +HP VRINLQFMIGNSVEENLKPRA TDSLPDIVSVNASPYTA+LADQGLLAD
Sbjct: 94  VCDGFMHEHPGVRINLQFMIGNSVEENLKPRATTDSLPDIVSVNASPYTASLADQGLLAD 153

Query: 61  IGDTQAWGNMLEVLQREWTSPGGRRYGIPSGVATTLIYYNRDMFDRAGITAPPADFESFL 120
           +G T++W  +L++LQREWT+PGG R+G+PSGVATTLIYY+ D+F+RAGI A P DFE FL
Sbjct: 154 LGQTRSWHGLLDILQREWTAPGGCRFGLPSGVATTLIYYHPDLFERAGIQALPGDFEQFL 213

Query: 121 AAGAALRKAGLVPLALPGGFPNMLGNGPFSYGFANQIAAKVPDWRARIANGTLQLDNADG 180
           AAGAALR+AG+ PLAL GGFPNMLGNGPFSYGFAN +A+  PDWR  IANGTL LDNA G
Sbjct: 214 AAGAALRRAGITPLALSGGFPNMLGNGPFSYGFANLVASSTPDWRQHIANGTLALDNAQG 273

Query: 181 AAIFARLRTLVDQKMVQADCLRAGYDTTLRQFAEGRAAMTFQGSWAAGTLMNARGMRVGV 240
            A+F+RLRTL+ + +VQADCLRAGYD TLRQFAEGRAAMTFQGSWAAG LM  RG  VGV
Sbjct: 274 WAVFSRLRTLMTRHLVQADCLRAGYDATLRQFAEGRAAMTFQGSWAAGVLMQGRGQPVGV 333

Query: 241 FVPPWNDKGQPLKPVLGSETGFAVAQRSGARQRQAAVQFLDFLYGPGMPIWQAKRQNIPP 300
           FVPPWNDK QP + V+GSETGFA+AQR  AR RQAA +FLD+L+G G+P+WQ KRQNI P
Sbjct: 334 FVPPWNDKDQPRQAVIGSETGFAIAQRISARHRQAAARFLDYLFGAGLPVWQGKRQNILP 393

Query: 301 FRVIAADVKGDPALFALVDQMTRDAAASNAPGLYYSVLPVNTIDVLHPLLQSVLSGSQTP 360
           F+  A   KGD ALFAL   M RDAAA+ APGLYYS LPVNTIDVLH LL +VLSG  TP
Sbjct: 394 FKTPAPSAKGDAALFALAAGMARDAAATGAPGLYYSYLPVNTIDVLHALLPAVLSGKTTP 453

Query: 361 ARAARLLQDSITEQARLSAR 380
            +AAR LQ+SI+ QAR+  +
Sbjct: 454 VQAARALQESISAQARVGGK 473


>gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 153/377 (40%), Gaps = 45/377 (11%)

Query: 3   DAFSLKHPEVRINLQFMIGNSVEENLKPRAATDSLPDIVSVNASPYTATLADQGLLADIG 62
           D F   +P+V I   F+   + +  L P   +   PDI++ +     A  A +GLL D+ 
Sbjct: 49  DEFKKANPDVDIKPSFIEEEAYKVQL-PGWLSTQAPDIINWHNGERMAFYASRGLLEDVS 107

Query: 63  D---TQAWGNMLEVLQREWTSPGGRRYGIPSGVATTLIYYNRDMFDRAGITAPPADFESF 119
           +      W +      +E +S  G++Y +P+   +  ++Y +D+F + GI   P  ++ F
Sbjct: 108 EDWKKNGW-DATYASTKEASSWHGKQYSVPTVYYSWGMFYRKDLFKKVGIAGEPKTWDEF 166

Query: 120 LAAGAALRKAGLVPLALPGGFPNMLGNGPFSY--------GFANQIAAKVPDWRARIANG 171
           L A   L+ AG+ P+A+ GG       G F Y         F  Q+ A           G
Sbjct: 167 LDACKKLKAAGIAPIAV-GGRDAWTLAGWFDYLDLRINGNAFHQQLMA-----------G 214

Query: 172 TLQLDNADGAAIFARLRTLVDQKMVQADCLRAGYDTTLRQFAEGRAAMTFQGSWAAGTLM 231
            +   +A    +    ++L+D K    + L    D       +G+AAM   G++ A    
Sbjct: 215 DIAYTDARVKKVHTAWKSLIDNKYFIDNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGFP 274

Query: 232 NARGMRVGVFVPPWNDKGQPLKPVLGSETGFAVAQRSGARQRQAAVQFLDFLYGP----- 286
                 +G F  P  D   P      +E+    A+   AR +  A +F+ F+  P     
Sbjct: 275 AKLAPEMGYFQFPIIDANVPTAEEGPTESIHIPAK---ARNKADARRFIAFVGTPAISAK 331

Query: 287 ---GMPIWQAKRQNIPPFRVIA-------ADVKGDPALFALVDQMTRDAAASNAPGLYYS 336
              G+    A  ++  P   I+       ++ KG  + F   D MT++ A     G+   
Sbjct: 332 LAEGLGSLPANSKSPAPTEPISRIGFEILSNAKGGISQFYDRD-MTKEMADEGMKGMQKF 390

Query: 337 VL-PVNTIDVLHPLLQS 352
           V  P    DVL+ L QS
Sbjct: 391 VSDPTRIDDVLNELEQS 407


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,200,286
Number of extensions: 49923
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,207,925
Effective search space: 353922025
Effective search space used: 353922025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)