BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0019.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313995|ref|YP_003778087.1| urea ABC transporter periplasmi...   724   0.0  
gi|300311947|ref|YP_003776039.1| branched-chain amino acid ABC t...   239   3e-64

>gi|300313995|ref|YP_003778087.1| urea ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/349 (99%), Positives = 349/349 (100%)

Query: 1   MGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFKELNSLLFY 60
           MGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFKELNSLLFY
Sbjct: 69  MGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFKELNSLLFY 128

Query: 61  PVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYPRTTNKILR 120
           PVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYPRTTNKILR
Sbjct: 129 PVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYPRTTNKILR 188

Query: 121 SFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSNVPFYKELG 180
           +FLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSNVPFYKELG
Sbjct: 189 AFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSNVPFYKELG 248

Query: 181 NAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIKKWKEYAKA 240
           NAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIKKWKEYAKA
Sbjct: 249 NAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIKKWKEYAKA 308

Query: 241 KNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAPSGYTLEMD 300
           KNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAPSGYTLEMD
Sbjct: 309 KNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAPSGYTLEMD 368

Query: 301 KTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQKN 349
           KTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQKN
Sbjct: 369 KTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQKN 417


>gi|300311947|ref|YP_003776039.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 418

 Score =  239 bits (609), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 200/329 (60%), Gaps = 16/329 (4%)

Query: 1   MGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFKELNSLLFY 60
           +G+K++ +  D AS+WP FAEKA++L+  D+V+ VFGCWTS SRK+VLPVF++ N LL+Y
Sbjct: 93  LGRKIKIIQEDGASDWPTFAEKAKKLLENDRVAAVFGCWTSASRKAVLPVFEKDNGLLYY 152

Query: 61  PVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYPRTTNKILR 120
           P  YEG E  KNVFYTG    QQ +  + ++  ++   AK F L+G+DY++PRT+NKI R
Sbjct: 153 PTFYEGLEQSKNVFYTGQEATQQVLAGLNWVAKEK--KAKTFFLVGSDYIWPRTSNKIAR 210

Query: 121 SFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSNVPFYKELG 180
             + +  +K S + E Y P G++ + +++  IK         + + + G SNV FYK+L 
Sbjct: 211 KHIENV-LKGSVVGEEYYPLGNTQFGSLINKIK---LKKPDVIFADVVGGSNVAFYKQLK 266

Query: 181 NAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIKKWKEYAKA 240
            AG+ A    ++  SV E+E+ G+  + + G  A+  YF+S+ N  N  F+ ++    KA
Sbjct: 267 AAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFASMKYFQSLDNANNKKFVAEF----KA 322

Query: 241 KNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYK-APSGYTLEM 299
           K   N+   V  D  +A Y+G  +W  AVEKA S D DKV+AA  G   K AP GY    
Sbjct: 323 KFGANS---VIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVVAASPGIELKTAPEGYVKVH 379

Query: 300 DKTNHHLHKPVMIGEIKADGQFNVVYKTK 328
           +  NHHL     IGE + DGQF VVY+++
Sbjct: 380 E--NHHLWSKTRIGEAQKDGQFKVVYESE 406


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,104,794
Number of extensions: 45740
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)