BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0015.p (232 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 461 e-131 gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t... 219 2e-58 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 189 2e-49 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 180 8e-47 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 179 2e-46 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 461 bits (1186), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/232 (98%), Positives = 230/232 (99%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVSF 60 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNV F Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 61 EGQDITRLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG DIT+LKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRAS+IKGEVYELF Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV Sbjct: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 >gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 229 Score = 219 bits (557), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/233 (46%), Positives = 161/233 (69%), Gaps = 5/233 (2%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVSF 60 M +V++L YG + + V L V K ++++++GRNG+GKTTL K LMG+LP+ G++S Sbjct: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 Query: 61 EGQDITRLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGM-ATLSGRRASTIKGEVYEL 119 +G ++ L+ HQR + G+AYVPQGR IF+ +TV EN+ G+ A G+ + E+Y L Sbjct: 61 DGVELGSLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAAKGK----VPDELYSL 116 Query: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 FPVL +M R+GG+LSGGQQQQLAIARAL P++++LDEPTEGIQPSIIKDI R + + Sbjct: 117 FPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEI 176 Query: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 R+ + I++ EQ F E+AD F+V+ +G V T++ +D + K+L+V Sbjct: 177 RKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/217 (44%), Positives = 140/217 (64%), Gaps = 1/217 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVSF 60 +LQV L+ +Y AH L G+ L+++ G+V++L+GRNG GK+T LK LMG+L +G + Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 61 EGQDITRLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 G+DI +L PHQRA+LG+ YVP+ R IF L+V EN+ G ++ELF Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 P L M R GG +SGG+QQ L IAR L+ P+L++LDEP+EG+ P I++ + +I L+ Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGT 217 + G I ILLCEQ FA + D ++ +G +VAAGT Sbjct: 185 RSG-IAILLCEQNLHFASLVCDRGYLLDQGRIVAAGT 220 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 180 bits (457), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 141/226 (62%), Gaps = 2/226 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVSF 60 +L V L YG + L GV L VQ+G+++S+LGRNG G++TLLK LMG+LP ++G+ F Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLP-SRGDCRF 65 Query: 61 EGQDITRLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG+DI+ L H A+LG+ YVP+ RE+F L+V +N+L+G + +++ LF Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 P L + LSGG+QQ LA+ RALL P L+++DEPTEG+ P +++ + R + LR Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDV 226 RG + +LL EQ A EL+ VM RGE+V GT + ++ Sbjct: 186 TRG-VAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQET 230 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 179 bits (454), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 145/224 (64%), Gaps = 2/224 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVSF 60 +LQ+++L +YG +H L V+L+V +G+V++LLGRNG G+TT L+ +MG++ KG++ Sbjct: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 Query: 61 EGQDITRLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 GQ+ L H+ A G+ Y P+ R IF+ L+ EEN+++ + +I E+YE+F Sbjct: 71 NGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSID-EIYEMF 129 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 P LKE + +G LSGG+QQ LA+AR L +L++LDE +EG+ P I++ + R+I+ L+ Sbjct: 130 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLK 189 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGE 224 +G I++ EQ F FA LAD F VM G++V + Q++ + Sbjct: 190 AKG-YTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAK 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 641,404 Number of extensions: 24660 Number of successful extensions: 409 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 147 Length of query: 232 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,231,600 Effective search space: 184740000 Effective search space used: 184740000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)