BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0014.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314000|ref|YP_003778092.1| urease accessory UreD protein [...   561   e-161

>gi|300314000|ref|YP_003778092.1| urease accessory UreD protein
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  561 bits (1447), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/287 (96%), Positives = 283/287 (98%)

Query: 13  MPAPATPGAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAII 72
           MPAPATPGAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAII
Sbjct: 1   MPAPATPGAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAII 60

Query: 73  VHPPGGIVGGDQLSITAEVGQRAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWL 132
           VHPPGGIVGGDQLSITAE G+RAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWL
Sbjct: 61  VHPPGGIVGGDQLSITAEAGERAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWL 120

Query: 133 PQETIFFDGADVRMEHEVTLAADAAYLGAEILCFGRTASGETFDTGAVSQRTSIRRGGKL 192
           PQETIFFDGA+VRMEHEVTLAA+AAYLGAEILCFGRTASGETF+TGA+SQRTSIRRGGKL
Sbjct: 121 PQETIFFDGAEVRMEHEVTLAANAAYLGAEILCFGRTASGETFNTGAISQRTSIRRGGKL 180

Query: 193 VWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALLGRLRETIGALQLEGRSGA 252
           VWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALLG LRETIGALQLEGRSGA
Sbjct: 181 VWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALLGHLRETIGALQLEGRSGA 240

Query: 253 TLMKQVLIARYMGPSSLVARQWLHAAWHVLRPAVAGKDAAIPRIWNT 299
           TLMKQVLIARYMG SSLVARQWLHAAWHVLRPAV GK+AAIPRIWNT
Sbjct: 241 TLMKQVLIARYMGQSSLVARQWLHAAWHVLRPAVTGKEAAIPRIWNT 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,747
Number of extensions: 47191
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)