BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0006.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC trans...   542   e-155
gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC trans...    92   5e-20

>gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  542 bits (1396), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/277 (98%), Positives = 275/277 (99%)

Query: 1   MSDTVLPRPAAALNPAEREWQRHTPLQRILRFTVWLVIALAVVQSLRYIEIIPEFLYDAP 60
           MSDTVLPRPAAALNPA+REWQRHTPLQR+LRFTVWLVIALAVVQSLRYIEIIPEFLYDAP
Sbjct: 1   MSDTVLPRPAAALNPAQREWQRHTPLQRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAP 60

Query: 61  EQMSDMLARMWPIDWAYFSSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG 120
           EQMSDMLARMWPIDWAYF SDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG
Sbjct: 61  EQMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG 120

Query: 121 LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR 180
           LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR
Sbjct: 121 LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR 180

Query: 181 GPIEALQASGASKFSEIWYGYWPQLKPAFTSIVLLRWDINVRESAVLGIVGAGGVGMVLD 240
           GPIEALQASGASKFSEIWYGYWPQLKPAF SIVLLRWDINVRESAVLGIVGAGGVGMVLD
Sbjct: 181 GPIEALQASGASKFSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLD 240

Query: 241 TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277
           TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL
Sbjct: 241 TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277


>gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 92.0 bits (227), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 5/249 (2%)

Query: 27  QRILRFTVWLVIALAVVQSLRYIEIIPEFLYDAPEQMSDMLARMWPIDWAYFSSDVQ-AG 85
           Q   R  +WL IAL  + +   +    E         +  L RM+P D +    D+   G
Sbjct: 19  QLATRVVIWL-IALYAIYAATQLGFSWERFSSGLGNGAKFLGRMFPPDLS--KGDILWGG 75

Query: 86  LIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGLNLFARIVLVASRSVNSLVWALLFL 145
           + ETL IA L +L  I+ ++P GL+ A NL     ++  AR ++   RS++ ++ A+LF+
Sbjct: 76  IKETLQIAVLASLFGILFSLPIGLMGARNLMPSW-ISWPARALVSVCRSLHPVIVAILFV 134

Query: 146 AIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRGPIEALQASGASKFSEIWYGYWPQL 205
              G G LAG LA+   SIGF+GK+  E IE++    +EA++A+GAS  + I +G  PQ+
Sbjct: 135 KAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGASFMNVILFGVLPQV 194

Query: 206 KPAFTSIVLLRWDINVRESAVLGIVGAGGVGMVLDTALNLFQWPRVATVLVSIFAIVIVT 265
              F      + D N+R S ++GIVGAGGVG VL +A   F +  V T+LV+I  I++V 
Sbjct: 195 MSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFVFTILVTIITIIVVG 254

Query: 266 EVVVTQIRK 274
           E++   ++K
Sbjct: 255 ELLANSVKK 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 803,768
Number of extensions: 31985
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)