BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0005.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC trans...   464   e-132
gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC trans...   124   8e-30

>gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  464 bits (1195), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/267 (97%), Positives = 264/267 (98%)

Query: 1   MTTSSTSSTPRVSLAFKPQLATRVVIWLIALYAIYAATQLGFSWERFSSGLGNGAKFLGR 60
           MTTS+TS T RVSLAF+PQLATRVVIWLIALYAIYAATQLGFSWERFSSGLGNGAKFLGR
Sbjct: 1   MTTSNTSPTARVSLAFRPQLATRVVIWLIALYAIYAATQLGFSWERFSSGLGNGAKFLGR 60

Query: 61  MFPPDLSKGDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPARALVSV 120
           MFPPDLSKGDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPARALVSV
Sbjct: 61  MFPPDLSKGDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPARALVSV 120

Query: 121 CRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGA 180
           CRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGA
Sbjct: 121 CRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGA 180

Query: 181 SFMNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFV 240
           SFMNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFV
Sbjct: 181 SFMNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFV 240

Query: 241 LTILITIITIIVVGELLANSVKKVFNV 267
            TIL+TIITIIVVGELLANSVKKVFNV
Sbjct: 241 FTILVTIITIIVVGELLANSVKKVFNV 267


>gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  124 bits (311), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 147/273 (53%), Gaps = 14/273 (5%)

Query: 5   STSSTPRVSLAFKP-----------QLATRVVIWL-IALYAIYAATQLGFSWERFSSGLG 52
           S +  PR + A  P           Q   R  +WL IAL  + +   +    E       
Sbjct: 2   SDTVLPRPAAALNPAQREWQRHTPLQRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAPE 61

Query: 53  NGAKFLGRMFPPDLSK-GDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSW-I 110
             +  L RM+P D +  G  +  G+ ETL IA L +L  I+ ++P GL+ A NL     +
Sbjct: 62  QMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGL 121

Query: 111 SWPARALVSVCRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIK 170
           +  AR ++   RS++ ++ A+LF+   G G LAG LA+   SIGF+GK+  E IE++   
Sbjct: 122 NLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRG 181

Query: 171 QVEAIRATGASFMNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFS 230
            +EA++A+GAS  + I +G  PQ+   F+     + D N+R S ++GIVGAGGVG VL +
Sbjct: 182 PIEALQASGASKFSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLDT 241

Query: 231 AFQRFDYDFVLTILITIITIIVVGELLANSVKK 263
           A   F +  V T+L++I  I++V E++   ++K
Sbjct: 242 ALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRK 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 586,527
Number of extensions: 20268
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 5
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)