BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0004.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC trans... 518 e-148 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 146 2e-36 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 144 9e-36 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 141 7e-35 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 140 8e-35 >gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 518 bits (1335), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/256 (99%), Positives = 255/256 (99%) Query: 1 MSHAIEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRG 60 MSHAIEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRG Sbjct: 1 MSHAIEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRG 60 Query: 61 AIWFEGEGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTA 120 AIWFEGEGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTA Sbjct: 61 AIWFEGEGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTA 120 Query: 121 WRRNFAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPT 180 WRRNFAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPT Sbjct: 121 WRRNFAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPT 180 Query: 181 SSLDPKTSFEIISLLKEQGLAQKIPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENL 240 SSLDPKTSFEIISLLKEQG AQKIPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENL Sbjct: 181 SSLDPKTSFEIISLLKEQGRAQKIPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENL 240 Query: 241 SDDFLKQIYGGEDWLA 256 SDDFLKQIYGGEDWLA Sbjct: 241 SDDFLKQIYGGEDWLA 256 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 146 bits (368), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/254 (37%), Positives = 146/254 (57%), Gaps = 26/254 (10%) Query: 5 IEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRGAIWF 64 +E + + K + + +L GI+L I ++ +IGPSG+GKSTL+RCIN L + G + Sbjct: 2 VEFKSVSKRFG-SNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60 Query: 65 EGEGKRVNLAELRGRA-LREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTAWRR 123 +G ++ L G + +R R+ GMVFQ++NL +L+ +EN+ G R Sbjct: 61 DG------ISVLSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGP-------RHVRG 107 Query: 124 NFAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPTSSL 183 ++E A A ELL VGL + + LSGGQ+QRV IARAL RP+L+L DEPTS+L Sbjct: 108 ASSEEANALASELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSAL 167 Query: 184 DPKTSFEIISLLKEQGLAQK-IPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENLSD 242 DP+ E++ ++ Q LA++ + +IV H++ A+R R+I M GH+ DGN L + Sbjct: 168 DPELRQEVLRVM--QSLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNPGELIE 225 Query: 243 --------DFLKQI 248 +FLK + Sbjct: 226 NSCNPRLREFLKHV 239 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 144 bits (362), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 139/240 (57%), Gaps = 14/240 (5%) Query: 1 MSHAIEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRG 60 M +E+QG+ K + + +L+G+ ++ ++AIIG SG+GKST +RCINRL G Sbjct: 1 MHTVVELQGVHKRFG-SNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAG 59 Query: 61 AIWFEGEGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTA 120 I G +LRG RR +G+VFQ YNL L+V++N+ G TA Sbjct: 60 QISVCGHALHAAGLDLRGL-----RRDVGIVFQGYNLFPHLTVLQNITLGP-------TA 107 Query: 121 WRRNFAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPT 180 +R A + A ++L VGL + A + LSGGQ+QRV IAR+L +P+L+L DE T Sbjct: 108 VKRMPADQAQTLAQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVT 167 Query: 181 SSLDPKTSFEIISLLKEQGLAQKIPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENL 240 S+LDP+ + E++ ++ EQ ++ + +I+ H++ A+R AD++I M G V G E L Sbjct: 168 SALDPELTGEVLKVM-EQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGPEIL 226 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 141 bits (355), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 150/256 (58%), Gaps = 30/256 (11%) Query: 5 IEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRGAIWF 64 I++ L K + H IL+GID +I ++ +IGPSG+GKST +RC+N L + S G I+ Sbjct: 2 IKVNQLQKRFGQAH-ILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 65 EG---EGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTAW 121 EG +VNL LR +GMVFQ +NL ++V+ENL + A Sbjct: 61 EGVKLNDPKVNLNALRA--------ELGMVFQRFNLFPHMTVLENL-------IMAPMQV 105 Query: 122 RRNFAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPTS 181 ++ +E + A +LL VGL + + + LSGGQ+QRV IARAL P+++L DEPTS Sbjct: 106 KKLSRREAVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTS 165 Query: 182 SLDPKTSFEIISLLKEQGLAQK-IPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENL 240 +LDP+ E+++++K+ LA++ + ++V H++ A+ +DR++ + G ++ +G + + Sbjct: 166 ALDPELVGEVLTVMKQ--LAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQV 223 Query: 241 --------SDDFLKQI 248 + DFL+++ Sbjct: 224 LGDPHHERTRDFLRKV 239 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 140 bits (354), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 142/254 (55%), Gaps = 22/254 (8%) Query: 5 IEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRGAIWF 64 IE++ + K + H +LK + L + ++ +IGPSG+GKST++RCIN L RG I Sbjct: 2 IEVKRISKCFGR-HEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 65 EGEGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTAWRRN 124 +G+ RV+ G + R +GMVFQ +NL +V+EN+ G + YVN R Sbjct: 61 DGQ--RVDR---DGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPI-YVNGLA---RA 111 Query: 125 FAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPTSSLD 184 A+ + A LLD VGL + LSGGQ+QRV IAR+L +P +L DEPTS+LD Sbjct: 112 QARSE---AMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALD 168 Query: 185 PKTSFEIISLLKEQGLAQKIPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENL---- 240 P+ E++++++ A + +IV H++ A+ ADR+ + G +V G A + Sbjct: 169 PELVGEVLAVMRTLA-ADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEP 227 Query: 241 ----SDDFLKQIYG 250 + DFL+++ G Sbjct: 228 QHARTQDFLRRVIG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 864,024 Number of extensions: 37263 Number of successful extensions: 536 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 137 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)