BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0002.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314013|ref|YP_003778105.1| two component response regulato... 397 e-112 gi|300313818|ref|YP_003777910.1| two component transcription reg... 194 6e-51 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 159 1e-40 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 157 6e-40 gi|300309981|ref|YP_003774073.1| two component response regulato... 148 3e-37 >gi|300314013|ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 397 bits (1020), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/228 (93%), Positives = 217/228 (95%), Gaps = 5/228 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 MHILLVEDDIDMSRAL+RALERRGFQV+HC DGISALSHIKDGIGDLVVLDLNIPGLDGL Sbjct: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTARAAXG-----LNAGADDYLAKPFDLDELDARIRALLRRRT 115 HLLQRIRSQDIGTPVIVLTAR A G LNAGADDYLAKPFDLDELDARIRALLRRRT Sbjct: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 NADDG QRCGRLRFDR SGAFYC D+PLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP Sbjct: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG 223 MEE+TQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG Sbjct: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG 228 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 194 bits (493), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 109/222 (49%), Positives = 144/222 (64%), Gaps = 8/222 (3%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED I++SR L +A+ V +G A S + LV+LDL +P +DG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 HLLQRIRSQDIGTPVIVLTARA-----AXGLNAGADDYLAKPFDLDELDARIRALLRRRT 115 +L+R+R++ TPV++LTAR GLN GADDYLAKPF+L+EL+AR++ALLRR Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 N + CG L FD S F E L LTPREH +L+ALI + GH V KEKLF+ VF Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETG---AEIMTLRGLGYLLR 214 +E+N ++AIE+ +HR+RKKL G I TLRGLGYLL+ Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LL+ED+ ++ L + L+ F+V DG A ++D D+V+LDL +P L G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 HLLQRIRSQDIGTPVIVLTARAAXG-----LNAGADDYLAKPFDLDELDARIRALLRRRT 115 ++L+R+R + G PV++LTA + L AGADDYL KPF++ EL ARI+ L+RR+T Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 CG L +D + F L L REH +L+ LI + G V+K L + VF Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDR 216 + E +AIEV + R+RKKL +GA IMTLRGLGYLLR R Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQR 221 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 157 bits (398), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 127/218 (58%), Gaps = 6/218 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED D++ A+V L R G V +G A + + DL++LD+ +P DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESY-DLLILDVMLPQQDGF 59 Query: 61 HLLQRIRSQDIGTPVIVLTARA-----AXGLNAGADDYLAKPFDLDELDARIRALLRRRT 115 LLQ++R++ TPV++LTA A L+ GADDYL KPFD ELDARIR LLRR Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 C L DR S + D +P+ELT RE TLL+ + A+PG K++L +F Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 213 +++N ++E V R+RKKL EI TLRGLGY L Sbjct: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 148 bits (374), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 127/218 (58%), Gaps = 5/218 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILL EDD ++ L R+L G+ +G+ A S + DL++LDL +P + GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTA-----RAAXGLNAGADDYLAKPFDLDELDARIRALLRRRT 115 +L+R+R+++ PV++LTA + GL+ GADDY+AKPF L EL+AR+RAL RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 R G L +D+ Y ++ LEL+ RE LL+ L+ + G V+KE+L + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 213 E AIEV VHR+RKK+ G I T+RGLGY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.142 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 649,238 Number of extensions: 24925 Number of successful extensions: 241 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 41 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)