BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0011.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311021|ref|YP_003775113.1| hypothetical protein Hsero_1692...    72   2e-14

>gi|300311021|ref|YP_003775113.1| hypothetical protein Hsero_1692
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 57  EADASPAHPSRSVDLEDAILRIFDETFGPR-TDTLERQMSMSLIAEIGPAAFVQKVLWGE 115
           E   S  H  ++ DL+ A+ RI  E +GP  T ++E +++M ++  +G   FV+K+LWGE
Sbjct: 65  ERAGSRLHQQQTEDLDKAVERILREGYGPEETGSIELELAMPVLRAVGAEVFVKKLLWGE 124

Query: 116 EISDIALTIALERMLPALEMLVEAHPRAFLRQANSVLGRFKS 157
           E  D+ L  A+ +++P  E LV+ HP   L QA   L   ++
Sbjct: 125 EEDDLTLACAMAKVIPQFECLVQEHPFLLLSQAADCLDAIRN 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 498,725
Number of extensions: 20081
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)