BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0003.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine...   373   e-105
gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...    89   2e-19
gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...    76   2e-15

>gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  373 bits (957), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/190 (95%), Positives = 186/190 (97%)

Query: 1   MEYAYKLMASPAGLLKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDRPVLIETEHQLRE 60
           MEYAYK MASPAG+LKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDR VLIETEHQLRE
Sbjct: 1   MEYAYKRMASPAGVLKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDRAVLIETEHQLRE 60

Query: 61  YFAGERESFDIPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNDKAVRAVGAANG 120
           YFAGERESFD+PLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGN+KAVRAVGAANG
Sbjct: 61  YFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANG 120

Query: 121 RNPISIIAPCHRVIGTGGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVIDPRRKAQSRR 180
           RNPI IIAPCHRVIG GGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVIDPRRKAQSRR
Sbjct: 121 RNPICIIAPCHRVIGAGGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVIDPRRKAQSRR 180

Query: 181 RQDPNQLSLL 190
           R+DPNQLSLL
Sbjct: 181 REDPNQLSLL 190


>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score = 89.0 bits (219), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 13  GLLKLVAKGDHLAAI-LWEDDDALRVRLGEMVEDED-RPVLIETEHQLREYFAG---ERE 67
           G L + A G  + A+ L ED D L  +L +     D  P   + E  L +  A     R+
Sbjct: 213 GALLVAATGQGICAVTLGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPRQ 272

Query: 68  SFDIPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNDKAVRAVGAANGRNPISII 127
              +PL   GT FQ++VW AL  IP G T TY ++A +LG   AVRAV  A   N I+++
Sbjct: 273 GAALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLGQPAAVRAVANACANNEIAVL 332

Query: 128 APCHRVIGTGGELTGFAGGLHVKKLLLAIEGISTEG 163
            PCHR++   G  +G+  G+  K  LLA E  + EG
Sbjct: 333 IPCHRIVRLDGSPSGYRWGIQRKAALLAREAANREG 368


>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 75.9 bits (185), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 10/124 (8%)

Query: 44  EDEDRPVLIETEHQLREYFAGERESFDIPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIA 103
           +D    V  +   Q+  Y A     FD+P    G+ FQ++VW A++ IP GQ  TY  +A
Sbjct: 56  KDATDAVAAQAVQQITHYLADPAYRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVA 115

Query: 104 RQLGNDKAVRAVGAANGRNPISIIAPCHRVIGTGGELTGFA-----GGLH--VKKLLLAI 156
           +++    A RAVG A G N   ++ PCHRV   GG L GF+      G H  VK+ LL  
Sbjct: 116 KRI--QSAPRAVGQACGANWYPLVIPCHRVTAAGG-LGGFSHHDAEDGFHLEVKRWLLRH 172

Query: 157 EGIS 160
           EG++
Sbjct: 173 EGVA 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,401
Number of extensions: 21542
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 3
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)