BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0203.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310477|ref|YP_003774569.1| GntR family transcription regul... 396 e-112 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 75 5e-15 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 65 4e-12 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 64 8e-12 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 58 6e-10 >gi|300310477|ref|YP_003774569.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 396 bits (1017), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/234 (88%), Positives = 219/234 (93%) Query: 2 STATEPITLNVPPLDRSRHAAPQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIR 61 ST+T PI + PPLDRSRHAAPQVFEHLRELIIG+RL P TVLQRAELAAQYGLSQTPIR Sbjct: 3 STSTAPIVITPPPLDRSRHAAPQVFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIR 62 Query: 62 DALIKLGEEGLVDIFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRL 121 DALIKLGEEGLVDIFPQHATVVSA+NVT ARQAHFLRRSIELEIVHTLA + + ALV+RL Sbjct: 63 DALIKLGEEGLVDIFPQHATVVSAVNVTLARQAHFLRRSIELEIVHTLAAQADAALVNRL 122 Query: 122 RDSIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPL 181 RDSIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELW+MVRRQSG+LDRLRNLHVP+ Sbjct: 123 RDSIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLHVPI 182 Query: 182 PGKTKRVLRDHAALVDAIAAGDAEAAQAALREHLSGTLTHLEEIRQRFPHYLKD 235 PGKT RVLRDHAA+VDAIAAGD AAQAALREHLSGTL LEEIRQRFPHY+KD Sbjct: 183 PGKTARVLRDHAAIVDAIAAGDPAAAQAALREHLSGTLAQLEEIRQRFPHYVKD 236 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 94/201 (46%) Query: 15 LDRSRHAAPQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIRDALIKLGEEGLVD 74 +D + A + E + ELI +L PG L LA ++G+S+TPIR+ALI+L G+V+ Sbjct: 1 MDTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVE 60 Query: 75 IFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRLRDSIEVQRVLAGR 134 + P+ +V+ I Q + + E ARR A + L + + + Sbjct: 61 MRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDA 120 Query: 135 ENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPLPGKTKRVLRDHAA 194 + + ++AFH +Y + L R L R L + + + K +H A Sbjct: 121 NDPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180 Query: 195 LVDAIAAGDAEAAQAALREHL 215 +VDAI +GDAE LREH+ Sbjct: 181 VVDAIISGDAEKTVDLLREHI 201 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 3/195 (1%) Query: 24 QVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIRDALIKLGEEGLVDIFPQHATVV 83 +V+E LR+ ++G + PGT L+ LA + G+S+TP+R AL +L E+GL V Sbjct: 7 KVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGIHV 66 Query: 84 SAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRLRDSIE--VQRVLAGRENYAEFV 141 +A + + LR +E A R + +++ LR+S E Q + +G + E + Sbjct: 67 AAWSDWDIEETFQLRMLLEPYAASLAAERGDEKMLALLRESNEKMAQAIKSGGLHSVEKI 126 Query: 142 -LADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPLPGKTKRVLRDHAALVDAIA 200 A+ FHR + E + P L AM+ +R+ H+ + ++ L H L+ A+ Sbjct: 127 QAANSIFHRTILEYSASPRLRAMLETIIDMPIIVRSFHLYEKSELEQSLHHHQDLLLAMQ 186 Query: 201 AGDAEAAQAALREHL 215 A DAE A+ ++ HL Sbjct: 187 ARDAELARQVMQLHL 201 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 64.3 bits (155), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 6/207 (2%) Query: 22 APQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIRDALIKLGEEGLVDIFPQHAT 81 A QV+ L++ I RL+PG E+A + G+S+TP+RDAL +L EG +++ + Sbjct: 10 AEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGW 69 Query: 82 VVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRLRDSIEVQRVLAGRENYAEFV 141 V I+ + + LR +E+ + L + E + ++I + A + + + Sbjct: 70 KVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAVKVA 129 Query: 142 LADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPLPGKTKRV---LRDHAALVDA 198 D+AFH + AA E M R + +++R + K KR+ +H ++ Sbjct: 130 QLDEAFHTNLVAAAGNEE---MTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQL 186 Query: 199 IAAGDAEAAQAALREHLSGTLTHLEEI 225 IA A AQ LR H++ + + +I Sbjct: 187 IAKRKATEAQILLRAHITQSKLEVRKI 213 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 8/220 (3%) Query: 10 LNVPPLDRSRHA-APQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIRDALIKLG 68 +++P DR + VF ++ I+ + PG+ + ELA YG+S+ P+R+A+ +L Sbjct: 5 ISLPGNDREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLE 64 Query: 69 EEGLVDIFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRLR---DSI 125 + L+ P V ++ + + +R S+E A+R A + LR D+ Sbjct: 65 GQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTH 124 Query: 126 EVQRVL-AGRENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRL-RNLHVPLPG 183 E AGR Y + D FH ++ +A+ L ++ + L R+ R + P Sbjct: 125 EKDEAFQAGRGYYQQE--GDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPH 182 Query: 184 KTKRVLRDHAALVDAIAAGDAEAAQAALREHLSGTLTHLE 223 + ++ +H ++DA+A GD E A +R H+ + ++E Sbjct: 183 RPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIE 222 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 652,077 Number of extensions: 23393 Number of successful extensions: 116 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 12 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)