BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0200.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 213 2e-56 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 211 7e-56 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 193 1e-50 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 193 1e-50 gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 191 4e-50 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 213 bits (541), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 161/245 (65%), Gaps = 20/245 (8%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIGQGQVTL 60 +LEV +L A YG + VL + L+V QG++ T+IGPNGAGKTTLL AIMG++P +G + Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLP-SRGAMAF 63 Query: 61 DGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARREGL 120 DG + + EM M ++PE R +F M+IE+NL++GAF ++R H A Sbjct: 64 DGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQ-RYRTGQRDHAA----- 117 Query: 121 GDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLIID 180 LE YT+FP+LRERR Q AG+LSGGE QMLA+ R LM++P+LL++D Sbjct: 118 -------------TLEEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLD 164 Query: 181 EPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQKAS 240 EPSLGLAP++V E+F I+A L+ G +I+LVEQN A+ VAD+ Y+++ G + + AS Sbjct: 165 EPSLGLAPLIVREIFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPAS 224 Query: 241 EVALD 245 ++A D Sbjct: 225 QLAHD 229 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 211 bits (536), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 108/245 (44%), Positives = 164/245 (66%), Gaps = 17/245 (6%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIGQGQVTL 60 ML ++NL A YG + VL +S+ V +G++ T+IG NGAGKTT +RAI G+I G+VTL Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 61 DGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARREGL 120 GK + G+ + ++++ +A PEGR +F MS+ +NL++GAF F R Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFP---------RFTRARPK 111 Query: 121 GDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLIID 180 GD+ +LERA +FP+L+ER+ QLAG+LSGGE QMLAMAR +M P+++++D Sbjct: 112 GDIA--------HDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLD 163 Query: 181 EPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQKAS 240 EPS+GLAP++V+E+F I+ RLK +G T++LVEQ A+ VAD+ Y+++ GK+ + A Sbjct: 164 EPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPAD 223 Query: 241 EVALD 245 ++ D Sbjct: 224 KLQND 228 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 193 bits (490), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 23/247 (9%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIG--QGQV 58 +L+V L YG I + + L V +G+L T+IG NGAGKTT L+AI G +P +G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 TLDGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARRE 118 G+ L G ++E+ K +AM+PEGR +F MSI+ENL++GA+ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKG---------- 114 Query: 119 GLGDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLI 178 ++ ++++ + +FP+L+ER Q+AG+LSGGE QMLAMAR LMS PKLL+ Sbjct: 115 -----------QIAADIDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLL 163 Query: 179 IDEPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQK 238 +DEPS+GL+P++V ++FE++ + A+G TI+LVEQN + A+ A Y+M+ G + + + Sbjct: 164 LDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQ 223 Query: 239 ASEVALD 245 A ++ D Sbjct: 224 AQQMLDD 230 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 193 bits (490), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 23/247 (9%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIG--QGQV 58 +L+V L YG I + + L V +G+L T+IG NGAGKTT L+AI G +P +G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 TLDGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARRE 118 G+ L G ++E+ K +AM+PEGR +F MSI+ENL++GA+ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKG---------- 114 Query: 119 GLGDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLI 178 ++ ++++ + +FP+L+ER Q+AG+LSGGE QMLAMAR LMS PKLL+ Sbjct: 115 -----------QIAADIDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLL 163 Query: 179 IDEPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQK 238 +DEPS+GL+P++V ++FE++ + A+G TI+LVEQN + A+ A Y+M+ G + + + Sbjct: 164 LDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQ 223 Query: 239 ASEVALD 245 A ++ D Sbjct: 224 AQQMLDD 230 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 191 bits (485), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 159/249 (63%), Gaps = 22/249 (8%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIG---QGQ 57 +LEV+ L A YG + L D +L++ GQ+ T+IGPNGAGK+TLL A+MG +P G G+ Sbjct: 25 LLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 84 Query: 58 VTLDGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARR 117 + G+ ++ M E ++++PE R +F M++E+NL++GA+ +HR + Sbjct: 85 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYK-RHRNGESGYL--- 140 Query: 118 EGLGDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLL 177 D + YT+FP+L+ERR+Q AG+LSGGE QMLA+ R LM++P++L Sbjct: 141 ---------------DQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVL 185 Query: 178 IIDEPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQ 237 ++DEPSLGLAP++ E+ I+++L++ G +LVEQN A+ VAD+ Y+++ G+++ + Sbjct: 186 MLDEPSLGLAPLITREILSIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGEIVCAG 245 Query: 238 KASEVALDH 246 A +A D Sbjct: 246 PAGVLAEDS 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 795,223 Number of extensions: 33950 Number of successful extensions: 486 Number of sequences better than 1.0e-08: 116 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 132 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)