BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0199.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 169 3e-43 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 162 2e-41 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 158 3e-40 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 158 3e-40 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 153 1e-38 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 143/250 (57%), Gaps = 19/250 (7%) Query: 1 MLQLEKVSVRFGGLTAVDEVTLQVGTGDVVGLVGANGAGKTTLFNAISGLVRPTSGSIRF 60 +LQL +S FGGL + V V G++ GL+G NGAGKTT+FN I+GL+R +SGSIRF Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 61 NGADILHAPLHRRARLGIGRTFQIPQPMHELTVRQNLIVAQR----------------FA 104 N DI H+ GI RTFQ + E+T+ +N++V F Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 105 TGKVDA-AKIDEVLAFTGLAEKAERDAATELALTELKALEVAKALATQPKLLLLDEVLAG 163 + +A + E+L++ L KA A L+ E + LE A+ALAT+PKLLLLDE +AG Sbjct: 122 NAEKEARERALELLSWVRLDHKAHM-LADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 164 LETNGKRRFMQMLKGLHEAFAVGIVIIEHDIETISNLCPRVAVLNFGQLIAEGAPAQVFN 223 + K M + + + I +IEHD+ + LC R+AVLNFG++IAEG P Q+ N Sbjct: 181 MNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKN 239 Query: 224 DPAVIKSYTG 233 + VI++Y G Sbjct: 240 NQEVIEAYLG 249 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 162 bits (410), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 139/250 (55%), Gaps = 18/250 (7%) Query: 1 MLQLEKVSVRFGGLTAVDEVTLQVGTGDVVGLVGANGAGKTTLFNAISGLVRPTSGSIRF 60 ML++ +S+RFGGL AVD V+L V +V ++G NGAGKTT+FN ISG RPTSG I Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 61 NGADILHAPLHRRARLGIGRTFQIPQPMHELTVRQNLIVAQRFATG--------KVDAAK 112 +GA I P H+ A+ G+ RTFQ + +TV +NL+VAQ K A + Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 113 IDEVLAFT---------GLAEKAERDAATELALTELKALEVAKALATQPKLLLLDEVLAG 163 E A GL A R+A T L+ + +E+A+ + T+P+LLLLDE AG Sbjct: 128 KSEQEALQRAAYWLDQLGLTALANREAGT-LSYGLQRRVEIARCMITKPRLLLLDEPAAG 186 Query: 164 LETNGKRRFMQMLKGLHEAFAVGIVIIEHDIETISNLCPRVAVLNFGQLIAEGAPAQVFN 223 L K+ Q++ L V +++IEHD+ I + R+ V+ G+ I G P QV + Sbjct: 187 LNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRS 246 Query: 224 DPAVIKSYTG 233 D VIK+Y G Sbjct: 247 DERVIKAYLG 256 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 158 bits (400), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 146/251 (58%), Gaps = 19/251 (7%) Query: 1 MLQLEKVSVRFGGLTAVDEVTLQVGTGDVVGLVGANGAGKTTLFNAISGLVRPTSGSIRF 60 +L++ VS RFGGL A++ V + + G + GL+G NGAGKTT FN I+GL +P +G+ Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 61 NGADILHAPLHRRARLGIGRTFQIPQPMHELTVRQNLIVAQ-------------RFATGK 107 +G + H A+ GI RTFQ + E+TV +N++V R + Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 Query: 108 VDAAKIDE----VLAFTGLAEKAERDAATELALTELKALEVAKALATQPKLLLLDEVLAG 163 + A I E +L F G+ + A+R A L+ + + LE+A+ALAT P+LL LDE AG Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKR-TARHLSYGDQRRLEIARALATDPQLLALDEPAAG 183 Query: 164 LETNGKRRFMQMLKGLHEAFAVGIVIIEHDIETISNLCPRVAVLNFGQLIAEGAPAQVFN 223 + K ++L + +A I++IEHD++ + LC R+ VL++G+ IAEG PA V Sbjct: 184 MNATEKLGLRELLVKI-QAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQK 242 Query: 224 DPAVIKSYTGA 234 +PAVI++Y GA Sbjct: 243 NPAVIEAYLGA 253 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 158 bits (400), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 146/251 (58%), Gaps = 19/251 (7%) Query: 1 MLQLEKVSVRFGGLTAVDEVTLQVGTGDVVGLVGANGAGKTTLFNAISGLVRPTSGSIRF 60 +L++ VS RFGGL A++ V + + G + GL+G NGAGKTT FN I+GL +P +G+ Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 61 NGADILHAPLHRRARLGIGRTFQIPQPMHELTVRQNLIVAQ-------------RFATGK 107 +G + H A+ GI RTFQ + E+TV +N++V R + Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAR 124 Query: 108 VDAAKIDE----VLAFTGLAEKAERDAATELALTELKALEVAKALATQPKLLLLDEVLAG 163 + A I E +L F G+ + A+R A L+ + + LE+A+ALAT P+LL LDE AG Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKR-TARHLSYGDQRRLEIARALATDPQLLALDEPAAG 183 Query: 164 LETNGKRRFMQMLKGLHEAFAVGIVIIEHDIETISNLCPRVAVLNFGQLIAEGAPAQVFN 223 + K ++L + +A I++IEHD++ + LC R+ VL++G+ IAEG PA V Sbjct: 184 MNATEKLGLRELLVKI-QAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQK 242 Query: 224 DPAVIKSYTGA 234 +PAVI++Y GA Sbjct: 243 NPAVIEAYLGA 253 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 139/250 (55%), Gaps = 18/250 (7%) Query: 1 MLQLEKVSVRFGGLTAVDEVTLQVGTGDVVGLVGANGAGKTTLFNAISGLVRPTSGSIRF 60 +LQLE VS+ FGG+ A+ V L + +++ ++G NGAGK++L N +SGL RPT G++ Sbjct: 8 VLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 Query: 61 NGADILHAPLHRRARLGIGRTFQIPQPMHELTVRQNLIVAQ----------------RFA 104 G + P R RLG+ RTFQ L+VR N+++ + R Sbjct: 68 GGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRAR 127 Query: 105 TGKVDA-AKIDEVLAFTGLAEKAERDAATELALTELKALEVAKALATQPKLLLLDEVLAG 163 ++DA A+ ++++AF L AER L K +E+A+AL +P+LLLLDE +AG Sbjct: 128 RERIDARAQAEQMMAFLDLRAYAERQVGG-LPYGLQKRVELARALVARPRLLLLDEPMAG 186 Query: 164 LETNGKRRFMQMLKGLHEAFAVGIVIIEHDIETISNLCPRVAVLNFGQLIAEGAPAQVFN 223 + K ++ + F I++IEHDI + L RV VL+ G IA+GAPA V Sbjct: 187 MTVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQ 246 Query: 224 DPAVIKSYTG 233 D AVI++Y G Sbjct: 247 DAAVIEAYLG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 638,708 Number of extensions: 25465 Number of successful extensions: 368 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 274 Number of HSP's successfully gapped: 131 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)