BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0187.p (402 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 212 4e-56 gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 186 2e-48 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 93 3e-20 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 212 bits (540), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 207/398 (52%), Gaps = 9/398 (2%) Query: 9 PLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGSTETAYFNSV 68 PL G+ V+ L +A P+C L DLGA VIK+E P GD R + +R+ +++F Sbjct: 7 PLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGL-SSHFVWT 65 Query: 69 NRNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRDNPGLVYCS 128 NR+K S++++L+ EG+ I+ QL +++DV++QN G GL + L +P L+ C Sbjct: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLIVCD 125 Query: 129 ITGYDSSGPEATRPGYDLVIQGESGLMSLNGEASQPPLKLGVAAVDLFTGMYSAQGVLAA 188 I+GY GP + YDL+IQ E+G +S+ G +K G + D+ GMY+ +LAA Sbjct: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDD-VVKAGCSIADIAAGMYAYSNILAA 184 Query: 189 LYQ---RQQTGQGRHVEMALFDCGVMITSYYGLEALILGDDPPRYGNAHPSIIPYGVFDA 245 L + + G+G H+++++ + S+ A P R G H +I PYG F A Sbjct: 185 LIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPYGPFSA 244 Query: 246 ADGRLVIT-VGTNSQYQRFCHSVIDRPDLAEDARFKTNVSRGQHRDVLVPEINRELKARK 304 DG+ V+ + +++ FC V+ LA DARF +N R +HRDVL I Sbjct: 245 GDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVFAGLS 304 Query: 305 RADLLARLHQAGIPCGEVLGLHEALTSPRATSAGLVCTHPHAEAGSVQVLTPPYRFDGER 364 + ARL +A I V + E P+ +A T G V L PP D Sbjct: 305 AEQVAARLDEAQIANARVNTMQELWQHPQ-LAARQRWTEVATPVGKVAALLPPGANDSYD 363 Query: 365 LPVRKAPPSLGEGTGEVLQSLLGMEEAQIAALRERGVL 402 + +A P+LG+ T +L S LG E QIAALRERG + Sbjct: 364 YRM-EAIPALGQHTESIL-SALGYEAGQIAALRERGAV 399 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 186 bits (473), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/411 (28%), Positives = 208/411 (50%), Gaps = 22/411 (5%) Query: 9 PLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGSTETAYFNSV 68 PLAG++VL+L ++AGP+C+ +L + GA+VIKVE P GD R W R+ T+ + SV Sbjct: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQW--RVLKDGTSLWWSV 67 Query: 69 N-RNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRDNPGLVYC 127 RNK+SI+++++ Q+I R+LA ++DV+I+N++ G ++K+ L YE L++ NP + Sbjct: 68 QARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMV 127 Query: 128 SITGYDSSGPEATRPGYDLVIQGESGLMSLNGEASQPPLKLGVAAVDLFTGMYSAQGVLA 187 ++GY +GP PG+ + + G+ ++G +PP+++G++ D ++ G + Sbjct: 128 RLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMM 187 Query: 188 ALYQRQQT--------------GQGRHVEMALFDCGVMITSYYGLEALILGDDPPRYGNA 233 AL R T GQG+ V++AL++ + E G R G A Sbjct: 188 ALRHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGA 247 Query: 234 HPSIIPYGVFDAADGRLVITVGTNSQYQRFCHSVIDRPDLAEDARFKTNVSRGQHRDVLV 293 P I+P + +G ++ G + S I R D+A D N R + + Sbjct: 248 LPGIVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEID 307 Query: 294 PEINRELKARKRADLLARLHQAGIPCGEVLGLHEALTSPRATSAGLVCTHPHAEAGSVQV 353 I + + LA L A +P G++ + + + + + + H A+ V++ Sbjct: 308 AAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKL 367 Query: 354 --LTPPYRFDGERLPVRKAPPSLGEGTGEVLQSLLGMEEAQIAALRERGVL 402 +TP + + P LG + E+LQS LG +EA I LR++GV+ Sbjct: 368 PGITP--KMSETPGQTKWLGPELGAHSDEILQS-LGYDEAHIKMLRDQGVV 415 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 19/201 (9%) Query: 9 PLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGSTETAYFNSV 68 PL G+RVLDL+R+LAGP L LGAEV++++ G E V Sbjct: 207 PLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDP-------------YGWEEPNTVPEV 253 Query: 69 NRNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRDNPGLVYCS 128 KR ++L+ D +R+L +D+++ ++ + K GLD R NP L+ S Sbjct: 254 VLGKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVS 313 Query: 129 ITGYDSSGPEATRPGYDLVIQGESGL----MSLNGEASQPPLKLGVAAVDLFTGMYSAQG 184 + Y SG R G+D +IQ +G+ M + G A+ P+ L V A+D TG A Sbjct: 314 LDAYGWSGAWQCRRGFDSLIQMSTGIAEAGMRVMGSAA--PVNLPVQAIDHATGYLMAAA 371 Query: 185 VLAALYQRQQTGQGRHVEMAL 205 L L R G G V +L Sbjct: 372 ALRGLTLRMTRGVGIEVRASL 392 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,352,465 Number of extensions: 61670 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 3 Length of query: 402 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 315 Effective length of database: 1,207,925 Effective search space: 380496375 Effective search space used: 380496375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)