BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0184.p (513 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 890 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 650 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 507 e-144 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 477 e-136 gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 445 e-126 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/481 (92%), Positives = 467/481 (97%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 MIWFYNLNIAKKLALSFAVVIALTLLQGLFA+KELKQVN ASGEIV+KWMPTMDAARELQ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 GSLPPLRLNELELVTAVTPQER+AAN++IK RLDAL +QRA+FEQRMSEP+EKEQYAQF Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 KNL AY+KVDEQLAEMAANQQYDETRALFNG+SAKLY +MVGNL+AIVK+N SGSA+ADE Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 +AS VFR AQRWIVGLLAATV I SLLAF+VATNVSRPLKEAV+IAQRVARGDLTLRIRP Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 AGRDETG LMEALR MN+SLRDIV+EVRQGTDTI TAS+EIARGNLDLSNRTEQQAGSLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTVTQNADNARQANQLAATASDIASQGG+VVGQVVQTMEGITESSRRIAD Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 T 481 T Sbjct: 481 T 481 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/481 (69%), Positives = 395/481 (82%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WF NL IAKKL +SFA VI LT++ GLFA++ELK VN AS ++ W+PT+ AA+ +Q Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 SLP +R++EL++VTA TP ER A ++IK RLD LAKQRA +E ++SE EEK Y +F Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 K+ A YL++D++LA ++A + +E RALF G+S K + +M+ N++ I+KVN +GS R+D+ Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 A V+R+A WI+GLLAA V I LA +VA VSRPL EAV +A+RVA+GDLT+ IR Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 DETG LM +LR MNDSL+ IV EVR GTDTI TAS EIA GNLDLS+RTE+QAGSLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LT+TV QNADNARQANQLAA+ASDIA+QGG VVGQVVQTMEGITESS RIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV+KV AGS LVERAG+TM+EVVASVRRVTDVVAEISAA+ EQS GI E+N AITQMDE Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 T 481 T Sbjct: 481 T 481 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust. Identities = 272/481 (56%), Positives = 351/481 (72%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WFY+L I++KL +F VV+A+ G+F++++L QVNSAS EI W+P++ LQ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 ++ LR EL+ + A +E + ++ +++ L +A + ++SEPEEK Y + Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 K +A ++ +++ ++ + +E R L GES K Y + ++ + VN G+ +++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 A ++ A+ WI+ +AA + + LLA V+ ++RPL+EAV +AQRVA GDLT RI P Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 AG+DETG+L+ AL+ MNDSL IV +VR GT TI TAS EIA GNLDLS+RTE+QA SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTV QNADNARQANQLA +AS++ASQGG VV QVV TM I SSR+IAD Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV +V GS LVERAG TM+EVV SVRRVTD+V EIS+A+QEQS GI +VNLAI QMDE Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 T 481 T Sbjct: 481 T 481 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 477 bits (1228), Expect = e-136, Method: Compositional matrix adjust. Identities = 259/481 (53%), Positives = 335/481 (69%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WFYNL IA KL +F VV+ + G F+ EL VN +S +I W+P++DA ++ Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 +L R +++ + QE A+ + K++ L K+ A + + +SEP EKE Y + Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 +N+A Y + E+++ + Q AL N S +Y + + + +VN+ G+A +D Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 DA ++ A I+ L+ V + L++ +A V+RPL AV+IA++VA GDLT I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 A RDETG+L+EALR MN +L +IV EVRQGTDTI TAS EIA GN+DLS+RTEQQAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTV QN+DNARQANQLA AS++A GG VVG+VV TM I +SSR+I D Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV KV GS LV+ AG TM EVVASV+RV+D+VAEI+AA EQ+ GI ++N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 T 481 T Sbjct: 481 T 481 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 445 bits (1144), Expect = e-126, Method: Compositional matrix adjust. Identities = 265/484 (54%), Positives = 339/484 (70%), Gaps = 5/484 (1%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WF NL IA+KL L+F V+ L + G+F++ +L +V +AS EI WMP +L+ Sbjct: 1 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKR---LDALAKQRAVFEQRMSEPEEKEQYA 117 LR E +L A+ + A N + + L L K +E + E+E Y Sbjct: 61 LYFVRLRGTESQL--AIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELYT 118 Query: 118 QFGKNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSAR 177 + + +L +++ + + R LF G S KLY ++G+L ++K+N G Sbjct: 119 KVAGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNA 178 Query: 178 ADEDASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLR 237 A DA F ++ ++ LLAA +AIG LA VA ++RPL++AV+IA+RVA GDL + Sbjct: 179 ATADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQ 238 Query: 238 IRPAGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAG 297 I+ +DETG+LM+AL MN+ LR +V +VR GTD+IATAS EIA GNLDLS RTEQQA Sbjct: 239 IQVQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQAT 298 Query: 298 SLEETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRR 357 +LEETASA+E+LTSTV QN DNARQANQLA AS +A++GG VVGQVV+TME I E+S R Sbjct: 299 ALEETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNR 358 Query: 358 IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKEL 417 I +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+L Sbjct: 359 IVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 418 Query: 418 IDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQM 477 IDDSV KV AG++LV +AGSTM+EVV SV+RVTDVV+EISAA+ EQS GI+E+N A+TQM Sbjct: 419 IDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQM 478 Query: 478 DETT 481 DE T Sbjct: 479 DEVT 482 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,201,601 Number of extensions: 41840 Number of successful extensions: 511 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 369 Number of HSP's successfully gapped: 71 Length of query: 513 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 424 Effective length of database: 1,198,455 Effective search space: 508144920 Effective search space used: 508144920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)