BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0183.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...    66   3e-12

>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 18  TMSPGPSFVMVARTSVGGGRANGLLAALGMGIGGVLFAGAALLGLQAVLLAVPSLYLVLK 77
           T++PGP  + V    +  GR  GL+AA G   G V     A+LG  A++ A P  Y  L+
Sbjct: 15  TLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFAALIKAYPPAYHALQ 74

Query: 78  FGGGVYLAYMGWRIWRGARTPLMADDIALRDASPSVSRRSLWLGLVTQISNPKTAIAYTS 137
           + G  YLAY+G R  R A   L       + A+    RR  W  ++  + NPK  + + +
Sbjct: 75  YAGAAYLAYLGVRTLRSASAGLALAADG-QGAAAVPLRRIYWQSVLANMLNPKVTLFFIA 133

Query: 138 VFAAFLPAETSLP-FKGLTLLLVFLIEAGWYGLVAVALSS----ARPRRWYVQGKHWFDR 192
               F+  E      + L L LVF+++A +    A+AL S    A  RR      H  +R
Sbjct: 134 FLPQFVQREAGHEALQMLVLALVFIVQA-FAIFSAIALFSGAVGAYFRRRASASVH-LNR 191

Query: 193 TAGAVMMTLGFRLLL 207
            AG   + LG R+ L
Sbjct: 192 LAGCAFIGLGIRMAL 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 551,356
Number of extensions: 19776
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 5
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)