BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0182.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312102|ref|YP_003776194.1| LysR family transcription regul... 278 5e-76 gi|300312305|ref|YP_003776397.1| LysR family transcription regul... 94 2e-20 gi|300312111|ref|YP_003776203.1| LysR family transcription regul... 90 2e-19 gi|300310436|ref|YP_003774528.1| LysR family transcription regul... 88 8e-19 gi|300309864|ref|YP_003773956.1| LysR family transcription regul... 87 1e-18 >gi|300312102|ref|YP_003776194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 278 bits (710), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 155/302 (51%), Positives = 205/302 (67%), Gaps = 10/302 (3%) Query: 1 MRELSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQA 60 MRELSLD+LRTLV I DLG+F+AAA LHLA PT+SLH+S+LEER+G+ LL+R +V+ Sbjct: 1 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRAQVRP 60 Query: 61 TALGALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSY 120 + +G +I RAR+LL AD L+ + V+G GRVRLG STG + LLP+ L QL S+ Sbjct: 61 SGIGETLIARARQLLAAADQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQALEQLGRSH 120 Query: 121 PGIDVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSP 180 PGIDV+V ++ S ET+ARL G LDIGLVA+P + + WR D +MAFLPA+W++P Sbjct: 121 PGIDVQVMVLTSQETLARLAAGALDIGLVALPQAPVAGLTVQPWRRDPVMAFLPASWRAP 180 Query: 181 AAIKPGWLMDKPMIFNDATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGAA 240 + P WL +P+I N T++ RLT WFA GE+P ARI+LN+N+A+KSLV AGYGA Sbjct: 181 RVVTPAWLAAQPLILNAPETRLSRLTTEWFARGGEHPVARIQLNFNDAIKSLVGAGYGAT 240 Query: 241 ILPLE---QPLAAELERHKDIRIV--PLSPVLKRHIGVAHRALPNLDKATVNVLETIRQF 295 +LP E Q A L D RIV PL P L R +G+AHR + AT +VLE + Sbjct: 241 LLPHEASAQGAAVAL----DPRIVMRPLRPALWRPLGIAHRT-GQPEPATRHVLEALWAL 295 Query: 296 QE 297 ++ Sbjct: 296 KQ 297 >gi|300312305|ref|YP_003776397.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 10/295 (3%) Query: 4 LSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQATAL 63 L LR + IV+ G+ + A H+A + S + ++E+ LG+ LL RG R VQ T Sbjct: 5 FELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQTTDA 64 Query: 64 GALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSYPGI 123 G + AR + + + L D ++ G G +RL +T + LP VL + +P Sbjct: 65 GRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLARHPHT 124 Query: 124 DVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSPAAI 183 D+E+ S E + + +G D+G++A T S +Q +R D ++A L + + P A Sbjct: 125 DIELEEKLSYEVVQAVIDGVADVGIIA-DSTDSGPLQTYPFRQDHLVAVL--SKRHPLAR 181 Query: 184 KPGW----LMDKPMIFNDATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGA 239 + L+ + + + + + AG+ + R+ L + + +V G Sbjct: 182 RKSLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGV 241 Query: 240 AILPLEQPLAAELERHKDIRIVPLSPV-LKRHIGVAHRALPNLDKATVNVLETIR 293 A+LP LA+ H DIR +PLS +R + + R L L T +++ ++ Sbjct: 242 AVLPETAALAS--TPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQALQ 294 >gi|300312111|ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 119/244 (48%), Gaps = 7/244 (2%) Query: 4 LSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQATAL 63 L LR + I + + + +A ++L+ S + +LE R G+ LL R S+ VQ T Sbjct: 3 FDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLTPA 62 Query: 64 GALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSYPGI 123 G ++ A++ ++ + L +++ G G +R+ +T V +P +L + +P + Sbjct: 63 GHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 Query: 124 DVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSPAAI 183 +V + +++ + +QEGT DIG+VA P+ + +QI ++ +DR++ L + P A Sbjct: 123 NVALEERLNHDILRGIQEGTADIGIVAGPVQG-EGLQILNFSTDRLV--LATALEHPLAD 179 Query: 184 KPGWLMDKPMIFN----DATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGA 239 P + + + + ++ AE G+ + RI++ EAM ++ G Sbjct: 180 APSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGI 239 Query: 240 AILP 243 ILP Sbjct: 240 GILP 243 >gi|300310436|ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 300 Score = 88.2 bits (217), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 9/247 (3%) Query: 4 LSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQATAL 63 L L QLR + + F AA LH+ QP +S ++ LEE LG+ L R R V TA Sbjct: 7 LELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRSVALTAA 66 Query: 64 GALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSYPGI 123 GA ++ A+RLL+ A L D+ R+ G G + L + ++LP +L++ YP + Sbjct: 67 GAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYSILPPLLQRFRAHYPQV 126 Query: 124 DVEVNIMGSNETMARLQEGTLDIGLV--AIPITASKDIQITHWRSDRMMAFLP---ATWK 178 +E+ ++ + L +G +D GL+ +P A+ +++ S+ ++A LP + Sbjct: 127 QIELREATTDVQLEDLLQGKIDAGLLLPPLPEKAAALLEVRPVLSEPLIAALPEGAVRKR 186 Query: 179 SPAAIKPGWLMDKPM-IFNDATTQMYRLT-MAWFAEAGENPRARIELNYNEAMKSLVSAG 236 P ++K L + P+ IF + T ++ F +AG P E + + LVSAG Sbjct: 187 GPVSLK--SLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAG 244 Query: 237 YGAAILP 243 G A++P Sbjct: 245 MGMALVP 251 >gi|300309864|ref|YP_003773956.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 5/244 (2%) Query: 4 LSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQATAL 63 L L Q+R V F AA L++ QP +S + LE RLG L R R V+ T Sbjct: 2 LDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTTE 61 Query: 64 GALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSYPGI 123 G + + A RLL+ ++ R+ +GK GRVR+G + L+P +L Q S P I Sbjct: 62 GRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPEI 121 Query: 124 DVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSPAA- 182 DV + + S + T+DIG + P+ + + +++ + ++ +P A Sbjct: 122 DVVLFELISVAQLEAFTANTIDIGFLR-PVASRQPLELQLVDEEALVLAMPQGHALAAYD 180 Query: 183 -IKPGWLMDKPMIFNDAT--TQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGA 239 I L +P I + T Y MA A P ++ + + SLV AG G Sbjct: 181 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 240 Query: 240 AILP 243 ILP Sbjct: 241 GILP 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 801,468 Number of extensions: 29239 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 63 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)