BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0176.p
         (422 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase [H...   819   0.0  
gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [H...    79   9e-16

>gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/411 (97%), Positives = 405/411 (98%)

Query: 12  FTAYYLAKRGISVAVIEKGRIGAEQSSRNWGWCRQQNRDARELPMATKSIDLWEQFSAET 71
           FTAY+LAKRGISVAV+EKGRIGAEQSSRNWGWCRQQNRDARELPMATKSIDLWEQFSAET
Sbjct: 31  FTAYFLAKRGISVAVVEKGRIGAEQSSRNWGWCRQQNRDARELPMATKSIDLWEQFSAET 90

Query: 72  GEDTGFTRCGLLYLSNDDEEIARWAAWGDFAKTAGVTTYMLDSKQAAERGHATGRAWKGG 131
           GEDTGF RCGLLYLSND+EEIARWAAWGDFAKTAGVTTYMLDSKQAAERGHATGRAWKGG
Sbjct: 91  GEDTGFNRCGLLYLSNDEEEIARWAAWGDFAKTAGVTTYMLDSKQAAERGHATGRAWKGG 150

Query: 132 VFSPTDGTADPGKAAPAVARAIMKLGGHVIQNCAARGIETEGGRVSGVITEAGVIKTKVA 191
           VFSPTDGTADPGKAAPAVARAIMKLGGHVIQ CAARGI+TEGGRVSGVITEAGVIKTKVA
Sbjct: 151 VFSPTDGTADPGKAAPAVARAIMKLGGHVIQQCAARGIDTEGGRVSGVITEAGVIKTKVA 210

Query: 192 VMAGGAWASSFCHQLGIRFPQASVRQSIMSVAPMEQPLPGALFTSGVAVTRRSNGSYALA 251
           VMAGGAWASSFCHQLGIRFPQASVRQSIMSVAPME PLPGAL+TSGVAVTRRS+GSYALA
Sbjct: 211 VMAGGAWASSFCHQLGIRFPQASVRQSIMSVAPMEAPLPGALYTSGVAVTRRSDGSYALA 270

Query: 252 ISGRARVDPTMQFLRFSPQFLPMFAKRWRSLSPGGLEAWRSGHETLSRWRMDAPTPMERM 311
           ISGRARVDPTMQFLRFSPQFLPMFAKRWRSLSPGGLEAWRSGHETLSRWRMDAPTPMERM
Sbjct: 271 ISGRARVDPTMQFLRFSPQFLPMFAKRWRSLSPGGLEAWRSGHETLSRWRMDAPTPMERM 330

Query: 312 RILDASADPVSIRATHRRAVELLPQLAQAKVTHTWAGYVDSTPDGVPGIGELPQTPGLIL 371
           RILDASADP SIRATHRRAVELLPQLAQAKVTHTWAGYVDSTPDGVPGIGELPQTPGLIL
Sbjct: 331 RILDASADPASIRATHRRAVELLPQLAQAKVTHTWAGYVDSTPDGVPGIGELPQTPGLIL 390

Query: 372 AAGFSGHGFGIGPGAGHLIADLASGVEPIVDPRPYHPNRFSDSSWGKVADF 422
           AAGFSGHGFGIGPGAGHLIADLASG  PIVDPRPYHPNRFSDSSWGKVADF
Sbjct: 391 AAGFSGHGFGIGPGAGHLIADLASGAAPIVDPRPYHPNRFSDSSWGKVADF 441


>gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 153/410 (37%), Gaps = 80/410 (19%)

Query: 8   IIGIFTAYYLAKRGISVAVIEKGRIGAEQSSRNWGWCRQ-----------------QNRD 50
           I G   A  LA++G  V V E   +G   S RN G C                    NR 
Sbjct: 36  ITGSAAALALARKGARVVVCEADIVGGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRL 95

Query: 51  ARELPMATKSIDLWEQFSAETGEDTGFTRCGLLYLSNDDEEIARWAAWGD-FAKTAGVTT 109
            R        +D  E+   E   D  F R G L L+   E + + A   +  A+     T
Sbjct: 96  YRAF---DAGVDTVERLVREESIDCSFARHGKLKLAAKPEHVDKLARSQELLARHVDGDT 152

Query: 110 YMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVIQNCAARGI 169
            +L   Q   R       + GG+          G+    +A+A  + G   ++     GI
Sbjct: 153 RLLSRAQL--RDELGSDRYHGGLLMHKSAGMHVGRYVRGLAQAAQRRGALYLERTPVLGI 210

Query: 170 ETEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMSVAP---ME 226
           E + GR + V T AGV+     ++A G        Q+G   P   +R+ I+ V     + 
Sbjct: 211 EAKNGRYA-VRTSAGVLHAGQVLLASG------ISQVG---PFGWIRRRIVPVGAFLIVT 260

Query: 227 QPLPGALFTSGVAVTRRSNGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRSLSPGG 286
           +PLPGAL    +   R    +       RA  D  + F                    GG
Sbjct: 261 EPLPGALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLF--------------------GG 300

Query: 287 LEAWRSGHETLSRWRMDAPTPMERMRILDASADPVSIRATHRRAVELLPQLAQAKVTHTW 346
                       R R  A  P       DA +  + +RA   + +E+ P LAQ ++ + W
Sbjct: 301 ------------RARFAASNPQS-----DARSGEI-LRA---QMLEVFPALAQTRIDYCW 339

Query: 347 AGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASG 396
            G VD T D +P  G   Q  GL  + G+SGHG  +    G ++A++  G
Sbjct: 340 GGMVDMTTDRLPRAG---QRDGLYYSMGYSGHGTHMATLMGSMMAEIMDG 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,409,256
Number of extensions: 60555
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,203,190
Effective search space: 401865460
Effective search space used: 401865460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)