BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0171.p (547 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 637 0.0 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 184 2e-47 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 177 2e-45 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 174 1e-44 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 168 8e-43 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/369 (93%), Positives = 356/369 (96%) Query: 1 VKQFDIFLGKESGVGAGAAAGGAAVRPLVEVQGLRVNARKDDGTQVEIVKNVNFTVAPGE 60 +KQFDIFLGKESG GAG A GAA+RPLVEVQGLRVNARK+DG+QVEIVKNVNFTVA GE Sbjct: 1 MKQFDIFLGKESGAGAGGAGSGAALRPLVEVQGLRVNARKEDGSQVEIVKNVNFTVARGE 60 Query: 61 VLALIGESGSGKTTIALSLLGYARSGCQIAGGQVRIGQRQIDQMDEKALLAMRGHHVAYI 120 VLALIGESGSGKTTIALSLLGYAR+GC IAGGQVRIG+RQIDQMDEKALLAMRGHHVAYI Sbjct: 61 VLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQMDEKALLAMRGHHVAYI 120 Query: 121 AQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALALPNPDKIGERYPHQV 180 AQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALALPNPDKIGERYPHQV Sbjct: 121 AQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALALPNPDKIGERYPHQV 180 Query: 181 SGGQLQRVMAAMALITDPELVILDEPTTALDVTTQIEVLRAFKKVVKEIGTTAVYVSHDL 240 SGGQLQRVMAAMAL+T PELVILDEPTTALDVTTQIEVLRAFK VVKE+GTTAVYVSHDL Sbjct: 181 SGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKNVVKELGTTAVYVSHDL 240 Query: 241 AVVAQMADRIIVLRDGAVREVGTTDQVLHAPADTYTQSLIAAACPAARVVQLREILPETV 300 AVVAQMADRIIVLRDGAVRE G+T QVLHAPAD+YTQ L+AAA PAARVVQLREILP T+ Sbjct: 241 AVVAQMADRIIVLRDGAVRETGSTSQVLHAPADSYTQCLLAAASPAARVVQLREILPATL 300 Query: 301 PAEARAPLLRISGLVAGYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLAR 360 PAEARAPLLRISGLVAGYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLAR Sbjct: 301 PAEARAPLLRISGLVAGYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLAR 360 Query: 361 AVAGMIAPA 369 AVAGMIAPA Sbjct: 361 AVAGMIAPA 369 Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 23/245 (9%) Query: 46 VEIVKNVNFTVAPGEVLALIGESGSGKTTIALSLLGY---ARSGCQIAGGQVR--IGQRQ 100 V I+ ++N T+ G + +IGESGSGKTT+A ++ G AR Q+ G + + R Sbjct: 329 VRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETLSPTLEGRT 388 Query: 101 IDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQ--HGVMDKASAMRK-A 157 +Q V + Q+A A NP+ ++ +++ L HG+ K AMR+ Sbjct: 389 REQF----------RRVQIVFQNADTALNPSHSI-GRILNRPLSFYHGL--KGEAMRRRT 435 Query: 158 VELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALITDPELVILDEPTTALDVTTQIE 217 EL + LP + +R P ++SGGQ QRV A AL P+L++ DE T+ALD Sbjct: 436 AELLDLVQLPA--TVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAA 493 Query: 218 VLRAFKKVVKEIGTTAVYVSHDLAVVAQMADRIIVLRDGAVREVGTTDQVLHAPADTYTQ 277 +L ++ +E+ + +++SHD++ V + D I+VL G + + ++ P Y+ Sbjct: 494 ILELLAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRMVANRPREAMMAPPYHPYSH 553 Query: 278 SLIAA 282 L+++ Sbjct: 554 LLLSS 558 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/385 (32%), Positives = 209/385 (54%), Gaps = 40/385 (10%) Query: 28 LVEVQGLRVNARKDDGTQVEIVKNVNFTVAPGEVLALIGESGSGKTTIALSLLGYAR-SG 86 +++V L V + T V+ V++++F V GE LA++GESGSGK+ +L+++ G Sbjct: 7 VLDVNHLSVRFSTSERT-VDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGG 65 Query: 87 CQIAGGQV----RIGQR-QIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIES 141 +IA G + R GQR + Q D + ++RG +A I Q + NP T+ +Q+ ES Sbjct: 66 GKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAES 125 Query: 142 ALQHGVMDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALITDPELV 201 H + +A+A +A+ + + +P ++ R+PHQ+SGG QRVM AMAL P L+ Sbjct: 126 IRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLL 185 Query: 202 ILDEPTTALDVTTQIEVLRAFKKVVKEIGTTAVYVSHDLAVVAQMADRIIVLRDGAVREV 261 I DEPTTALDVT Q ++L+ + + +E+ ++++HD+ VVA++ADR++V+ G E Sbjct: 186 IADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEE 245 Query: 262 GTTDQVLHAPADTYTQSLIAAACPAARVVQLR--------------EILPETVPAEARA- 306 + + APA YTQSL+AA R+ +R E P+ + +E +A Sbjct: 246 NAVNPLFAAPAHPYTQSLLAA---VPRLGSMRGTDKPLRFGIAPQAEARPDLIASELQAQ 302 Query: 307 --------PLLRISGLVAGYGAPDRLGLPG-----VRILDDINLTIQRGSTVGIIGESGS 353 P+L++ L + + G+ G V ++ ++ + G T+ I+GESG Sbjct: 303 AEIAAQRQPILKVRDLTTRFDV--KSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGC 360 Query: 354 GKTTLARAVAGMIAPAAPKEPXGAR 378 GK+T R++ ++ A K G R Sbjct: 361 GKSTTGRSLLRLVDIAGGKVEFGGR 385 Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 134/237 (56%), Gaps = 9/237 (3%) Query: 46 VEIVKNVNFTVAPGEVLALIGESGSGKTTIALSLLGYARSGCQIAGGQVRIGQRQIDQMD 105 V V+ V+F + GE LA++GESG GK+T SLL IAGG+V G R + Q+ Sbjct: 336 VHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRL----VDIAGGKVEFGGRDLAQLP 391 Query: 106 EKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALA 165 L +R + +I Q A+ +P T+ ++E L HG+ K A + L + Sbjct: 392 RSELRQLR-RDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGM--KEGAQERVDALLTRVG 448 Query: 166 LPNPDKIGERYPHQVSGGQLQRVMAAMALITDPELVILDEPTTALDVTTQIEVLRAFKKV 225 L P+ G+RYPH+ SGGQ QR+ A AL +P++VI DE +ALDV+ Q +++ + Sbjct: 449 L-TPEH-GQRYPHEFSGGQRQRICIARALALNPKIVIADESVSALDVSIQAQIVNLMLDL 506 Query: 226 VKEIGTTAVYVSHDLAVVAQMADRIIVLRDGAVREVGTTDQVLHAPADTYTQSLIAA 282 E+G + +++SHD+AVV +++ R+ V+ G + E+G + P YT+ L+AA Sbjct: 507 QAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKLMAA 563 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/253 (36%), Positives = 152/253 (60%), Gaps = 1/253 (0%) Query: 28 LVEVQGLRVNARKDDGTQVEIVKNVNFTVAPGEVLALIGESGSGKTTIALSLLGYARSGC 87 L++V+ L+V+ ++G + V+ ++F V GE+L L+GESG GK+ +L+L+G Sbjct: 4 LLDVKNLKVDLPTENGM-LHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKA 62 Query: 88 QIAGGQVRIGQRQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGV 147 Q + + + M +K L+ +RG +A I Q + NP+ TL +Q+ E+ LQ Sbjct: 63 QCSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPG 122 Query: 148 MDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALITDPELVILDEPT 207 + +A A +A+ L + N + +YPHQ+SGG QRVM AM+L+ +P+L+I DEPT Sbjct: 123 VSRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPT 182 Query: 208 TALDVTTQIEVLRAFKKVVKEIGTTAVYVSHDLAVVAQMADRIIVLRDGAVREVGTTDQV 267 TALDVT Q ++LR +++ +E G ++++HDL VV+++ADR+ V+ G V E Q+ Sbjct: 183 TALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQL 242 Query: 268 LHAPADTYTQSLI 280 P YTQ L+ Sbjct: 243 FAQPRHPYTQGLL 255 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 153/254 (60%), Gaps = 1/254 (0%) Query: 29 VEVQGLRVNARKDDGTQVEIVKNVNFTVAPGEVLALIGESGSGKTTIALSLLGYARSGCQ 88 +EV+ LR + +G + V +V+ +V G +L L+GESGSGK+ S+LG + + Sbjct: 6 LEVRNLRTHFFTPEGV-LPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGR 64 Query: 89 IAGGQVRIGQRQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVM 148 I GG++ R + +MD+ +L ++G+ +A I Q NP + Q++++ L H + Sbjct: 65 IVGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKV 124 Query: 149 DKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALITDPELVILDEPTT 208 + A A + + + +P++ + YPHQ+SGG QRV A+A++ P+L+I DEPTT Sbjct: 125 SRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTT 184 Query: 209 ALDVTTQIEVLRAFKKVVKEIGTTAVYVSHDLAVVAQMADRIIVLRDGAVREVGTTDQVL 268 ALDVT Q ++L +K+ ++ GT ++++HDL+VVA +AD + V+ G + E G+ D VL Sbjct: 185 ALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVL 244 Query: 269 HAPADTYTQSLIAA 282 AP YTQ LI + Sbjct: 245 DAPLHPYTQGLIGS 258 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 168 bits (426), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 177/335 (52%), Gaps = 16/335 (4%) Query: 28 LVEVQGLRVNARKDDGTQVEIVKNVNFTVAPGEVLALIGESGSGKTTIALSLLGYARSGC 87 L+EV L V R D +V V+F +APGE AL+GESGSGKT +L+++ + Sbjct: 5 LLEVNNLTV--RFGDTV---VVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDAR 59 Query: 88 QIAGGQVRIGQRQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGV 147 G + + + + E+ + +RG+ VA I Q A NP T+ +Q+ E + H Sbjct: 60 --YEGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEG 117 Query: 148 MDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALITDPELVILDEPT 207 ++ A R+AV L +P P + YPH++SGGQ QR M AMAL P+L+I DEPT Sbjct: 118 LNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 177 Query: 208 TALDVTTQIEVLRAFKKVVKEIGTTAVYVSHDLAVVAQMADRIIVLRDGAVREVGTTDQV 267 TALDVT Q+++L ++ +E + +SHDL +V ADR+ V+ G + E + ++ Sbjct: 178 TALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAEL 237 Query: 268 LHAPADTYTQSLIAAACPAARVVQLREILPETVPAEARAPLLRISGLVAGYGAPDRLGLP 327 P YT+ L+ + P + P + AE I G+ A Sbjct: 238 FANPQQPYTRKLLQSR-PQRNAADVAADAPVVLQAERLRCTYHIK---QGWFAKR----- 288 Query: 328 GVRILDDINLTIQRGSTVGIIGESGSGKTTLARAV 362 +D ++L ++RG T+GI+GESGSGK+TL A+ Sbjct: 289 AFHAVDGVDLQLRRGETLGIVGESGSGKSTLGMAL 323 Score = 119 bits (298), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 134/232 (57%), Gaps = 5/232 (2%) Query: 49 VKNVNFTVAPGEVLALIGESGSGKTTIALSLLGYARSGCQIAGGQVRIGQRQIDQMDEKA 108 V V+ + GE L ++GESGSGK+T+ ++LL R G +R I + ++ Sbjct: 293 VDGVDLQLRRGETLGIVGESGSGKSTLGMALL---RLSAASVAGSIRFDGVPISERPQRE 349 Query: 109 LLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALALPN 168 L +R + + Q A+ +P RT+ +Q++ L+ D+++ ++ + + Sbjct: 350 LRPLRSR-MQVVFQDPFASLSPRRTV-EQIVGEGLELHHPDRSAEQQRQAIVAALEEVGL 407 Query: 169 PDKIGERYPHQVSGGQLQRVMAAMALITDPELVILDEPTTALDVTTQIEVLRAFKKVVKE 228 + ERYPH+ SGGQ QR+ A AL+ PEL++LDEPT+ALDVT Q +VL+ ++ + Sbjct: 408 SAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRR 467 Query: 229 IGTTAVYVSHDLAVVAQMADRIIVLRDGAVREVGTTDQVLHAPADTYTQSLI 280 G ++++HDLAVV MA ++IV++DG V E G T QVL P YT+ L+ Sbjct: 468 HGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLV 519 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,684,941 Number of extensions: 74440 Number of successful extensions: 891 Number of sequences better than 1.0e-08: 106 Number of HSP's gapped: 749 Number of HSP's successfully gapped: 123 Length of query: 547 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 457 Effective length of database: 1,193,720 Effective search space: 545530040 Effective search space used: 545530040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)