BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0170.p
         (92 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310465|ref|YP_003774557.1| dipeptide/oligopeptide/nickel A...   182   3e-48
gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel A...    57   3e-10

>gi|300310465|ref|YP_003774557.1| dipeptide/oligopeptide/nickel ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  182 bits (463), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGA 60
           MTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGA
Sbjct: 202 MTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGA 261

Query: 61  LAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 92
           LAVIMPALAIASLTIGVNLLIDNLRSKRAAKE
Sbjct: 262 LAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 293


>gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query: 4   EMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGALAV 63
           E+LPN++  ++    L   + +LL + LSFL LGVQPP   WG +V E  + +      +
Sbjct: 215 EILPNIMGALIVVVTLEMAHAILLEATLSFLGLGVQPPTPSWGLMVAEGKTYMFFKPWVI 274

Query: 64  IMPALAIASLTIGVNLLIDNLRSKRA 89
           ++P +A+A L + +NL+ D LR   A
Sbjct: 275 VIPGVALALLVLAINLVGDGLRDVNA 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.141    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 232,065
Number of extensions: 7029
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 92
Length of database: 1,619,870
Length adjustment: 62
Effective length of query: 30
Effective length of database: 1,326,300
Effective search space: 39789000
Effective search space used: 39789000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)