BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0155.p (673 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote... 1134 0.0 gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro... 907 0.0 gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herb... 747 0.0 >gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 1134 bits (2932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/676 (85%), Positives = 629/676 (93%), Gaps = 3/676 (0%) Query: 1 MATSTGTISTSAGPLDVSTLVNQLIAVESKSKLTPLKTKESGFNTLISAYGSLKNALTSY 60 MATSTGTISTSAGPLDV+TLVNQLI+VESKS+LTPLK KES FNTLISAYGSLKNA TSY Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QSALKVMTAASFSAQKTTVSNAGTGTSLTTDPFTAEANSDDSTKVLAQKLKSGGYASGAT 120 QSALK +TAASFSAQKTT+SNAGTGT+LTTDPFTA+ N+D+STKVLAQKL+S G+ +G T Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 Query: 121 FNAGDSIAIKIGTNSPTFITLQANATLAGVRDTINASKAGVTASIVTDGSGDHLVLESNT 180 FNAGDS+AIK+GTN PTFITLQANATLAGVRD INA+KAGVTASI TDGSGDHLVLESNT Sbjct: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSGLSYDPS--VSGSVTQIQAPRDATKAAAGKYSIGVSQLAQAVKV 238 GGTANTIK+TANNSLS L+YDPS VS +VTQIQAPRDA+KAAAGKY+I V+QLAQAVKV Sbjct: 181 GGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 Query: 239 SSAGIVPGTTFDNGVLAIKTGNGSTTLIQPKTNTLAGVRDAINASDAGVNAAIVSDGTND 298 SSAGI PG+TFDNGVLAIKTGNGST +IQPKTN+LAGVRDAINASDAGVNA+IV+DGTND Sbjct: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 Query: 299 HLVLTAKDSGAANSLRVSGTGNFAVFNFDPSGTVTTTGVATNQTYSSGSLALQVGSKSFT 358 HLVLTAKD+G+AN+LRV+GTGNFA FNFDPSGT+TTTGVATNQTYSSGSLALQVGSKSFT Sbjct: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 Query: 359 ITPTDLDNSGAIGLNDVMKAINDANTGVTASISNDGSNDHLVLTPAGTDPIKLVGSNDYA 418 I PTDLD SGAIGLNDVMKAINDANTGVTASI+NDGS DHLVLTP+GTD +KL G+ DY+ Sbjct: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPSGTDAVKLTGAGDYS 420 Query: 419 SLSGSSMGQLAKAQDAKLTIDGVAVTSTTNKVSNAISGVTLNLAKVTTAADNFSLSIAND 478 L+GSSMGQLAKAQDAKLT+DGV VTST+NKV+N ISGVTLNL+KVTT+ADNFSLSI ND Sbjct: 421 DLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFSLSINND 480 Query: 479 TSGLSTAANSFVTAYNNLAKAVTNLTKQTPSTTKGQASTGSPLAAESSVLNMMTQIRGTM 538 TSGLSTAAN+FVTAYN LAKAV NLTKQTPSTTKGQASTGSPLA+ESSVL +M Q+R TM Sbjct: 481 TSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTM 540 Query: 539 LGALGDDGGMNLSQVGISFQKDGTLALDATKLTTAGNKDFDAVAKLFT-GTSGVVPKLQK 597 LGALGD+G NLSQ+GISFQKDGTLALDATKLT A NKDFD + +LFT T+GVVPKLQK Sbjct: 541 LGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQK 600 Query: 598 LMDSILGDSGTLATKTKGLQDSLKIVTDQQTAANDRLQTLKDNYTNQFNRLNVTLATMQS 657 LMD ILG+SG LA+KTKGLQDSLKIVTDQQTAAN RLQ LKD YTNQFNRLNVTLATMQS Sbjct: 601 LMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQS 660 Query: 658 RQSYLTQQLAKLSKSS 673 RQSYLTQQLAKLSKSS Sbjct: 661 RQSYLTQQLAKLSKSS 676 >gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/690 (69%), Positives = 570/690 (82%), Gaps = 18/690 (2%) Query: 1 MATSTGTISTSAGPLDVSTLVNQLIAVESKSKLTPLKTKESGFNTLISAYGSLKNALTSY 60 MATSTGTISTSAGPLDV+TLV+QLI+ ES+S+LTPL T+ S +NTLISAYGSLK+A+++Y Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QSALKVMTAASFSAQKTTVSNAGTGTSLTTDPFTAEANSDDSTKVLAQKLKSGGYASGAT 120 QSA+K MT+ASFSAQK++VSNAGTG++LTTDPF+A+ N DDSTK+LAQK++S G +SG T Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 121 FNAGDSIAIKIGTNSPTFITLQANATLAGVRDTINASKAGVTASIVTDGSGDHLVLESNT 180 FNAGDSIAIKIGTNSP F+TLQAN+TLAGVRD INA K G TASIVTDG+GDHLVLESNT Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSGLSYDPSVS--GSVTQIQAPRDATKAAAGKYSIGVSQLAQAVKV 238 GGTANTIKVTANNSLSG YDPS S ++TQ QAPRDATKAA+G Y++ VSQLAQA K+ Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 239 SSAGIVPGTTFDNGVLAIKTGNGSTTLIQPKTNTLAGVRDAINASDAGVNAAIVSDGTND 298 SSA I PG+TFDNG+LAIKTG+GSTT+I+P TNTLAGVRDAIN+SDAGVNA IVSDGTND Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 299 HLVLTAKDSGAANSLRVSGTGNFAVFNFDPSGTVTTTGVATNQTYSSGSLALQVGSKSFT 358 HLV+TAK+SG+ N+++++GT NFAVFN DPSGTVT+ VA+ QTYS+G+L L+VG SF Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 Query: 359 ITPTDLDNSGAIGLNDVMKAINDANTGVTASISNDGSNDHLVLTPAG---TDPIKLVGSN 415 I P + SG I L V AIN+AN GVTASI+NDGSNDHLVLTP G T + L G++ Sbjct: 361 IAPV-ANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTS 419 Query: 416 DYASLSGSSMGQLAKAQDAKLTIDGVAVTSTTNKVSNAISGVTLNLAKVTTAADNFSLSI 475 DYA LS S MGQL KAQDAKL+IDGV VTS TNKV N ISGVTLNL+KVTT+ADNF+L+I Sbjct: 420 DYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNI 479 Query: 476 ANDTSGLSTAANSFVTAYNNLAKAVTNLTKQTPSTTKGQASTGSPLAAESSVLNMMTQIR 535 +NDTSG++TAANSFVTAYN LAKAV +T QTPSTT GQA+T +PLA+ESSV +M+Q+R Sbjct: 480 SNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLR 539 Query: 536 GTMLGALGDDGGMN-LSQVGISFQKDGTLALDATKLTTAGNKDFDAVAKLFTGT------ 588 T+ + G+N LS +GISFQKDGTLALD+TKL+TA +F +A LF GT Sbjct: 540 NTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTN 599 Query: 589 -----SGVVPKLQKLMDSILGDSGTLATKTKGLQDSLKIVTDQQTAANDRLQTLKDNYTN 643 +G+V KLQ LM S+L D+G +ATKT GLQ SLKI D+QTA RL LKD YTN Sbjct: 600 TTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTN 659 Query: 644 QFNRLNVTLATMQSRQSYLTQQLAKLSKSS 673 QFN+LN+TL++MQS QSYLTQQLA L+KSS Sbjct: 660 QFNQLNLTLSSMQSTQSYLTQQLANLAKSS 689 >gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/679 (57%), Positives = 510/679 (75%), Gaps = 8/679 (1%) Query: 1 MATSTGTISTSAGPLDVSTLVNQLIAVESKSKLTPLKTKESGFNTLISAYGSLKNALTSY 60 MATSTG+ISTSAGPLDV+ LVNQL++VESKS+LTPL +K FN LISAYG L ALT+Y Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QSALKVMTAASFSAQKTTVSNAGTGTSLTT--DPFTAEANSDDSTKVLAQKLKSGGYASG 118 Q+AL +TAA FSAQK VSN G + + D +A+ NSD STK AQ +KS G+ASG Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 119 ATFNAGDSIAIKIGTNSPTFITLQANATLAGVRDTINASKAGVTASIVTDGSGDHLVLES 178 F AGDS+AIK+G SP FITL+A+AT+ G+RDTINA++AGVTAS+V D +GDHLVLES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 179 NTGGTANTIKVTANNSLSGLSYDPSVS--GSVTQIQAPRDATKAAAGKYSIGVSQLAQAV 236 NT GTAN +KV ANNSLS +S+D S G++TQ QA RDAT AA G Y+I V QLAQ+ Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 237 KVSSAGIVPGTTFDNGVLAIKTGNGSTTLIQPKTNTLAGVRDAINASDAGVNAAIVSDGT 296 K+SSAGI PG+TFD GVLAIK G+GSTTLI+P +NTLAGVRDAINA+ AGVNA+IVSDG Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 297 NDHLVLTAKDSGAANSLRVSGTGNFAVFNFDPSGTVTTTGVATNQTYSSGSLALQVGSKS 356 +HLVLTAK+SGA N+LR+SGTG+FAVF+ DPSG +T V + +S G++ L VG+++ Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 Query: 357 FTITPTDLDNSGAIGLNDVMKAINDANTGVTASISNDGSND----HLVLTPAGTDPIKLV 412 ++ P A GL DV +AIN+A GV+A++ +G D LVL+ +G+DP+ L Sbjct: 361 ISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLR 420 Query: 413 GSNDYASLSGSSMGQLAKAQDAKLTIDGVAVTSTTNKVSNAISGVTLNLAKVTTAADNFS 472 GS DYA L+ S+MGQL K QDA+L+IDGVA+T+T+N + +AISGVTLNL K T+A D + Sbjct: 421 GSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLT 480 Query: 473 LSIANDTSGLSTAANSFVTAYNNLAKAVTNLTKQTPSTTKGQASTGSPLAAESSVLNMMT 532 L+I+ND+SG+ A NSFV A+N LAKA+ +T+Q P+ +GQA LA ES V + Sbjct: 481 LAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVRALTG 540 Query: 533 QIRGTMLGALGDDGGMNLSQVGISFQKDGTLALDATKLTTAGNKDFDAVAKLFTGTSGVV 592 ++R +L ++ + +L+ +G+ F+KDGTL LD+ +L AG ++F+AVA+LF G G+V Sbjct: 541 ELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLV 600 Query: 593 PKLQKLMDSILGDSGTLATKTKGLQDSLKIVTDQQTAANDRLQTLKDNYTNQFNRLNVTL 652 + + L+D +LG+ G LA KT+GLQ SLKIV+DQQ AA RL L+D+YTNQFNRLNVTL Sbjct: 601 ARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTL 660 Query: 653 ATMQSRQSYLTQQLAKLSK 671 + MQ+ Q+YLTQQLA+L + Sbjct: 661 SKMQASQNYLTQQLARLRR 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.122 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,736,010 Number of extensions: 69167 Number of successful extensions: 327 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 5 Length of query: 673 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 581 Effective length of database: 1,184,250 Effective search space: 688049250 Effective search space used: 688049250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 134 (56.2 bits)