BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0154.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313036|ref|YP_003777128.1| hypothetical protein Hsero_3742...   169   1e-43

>gi|300313036|ref|YP_003777128.1| hypothetical protein Hsero_3742
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  169 bits (429), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 127/224 (56%), Gaps = 13/224 (5%)

Query: 5   AQIAEIHRALSPARISTYA-----AATHCHGPDDPAALNLYLWNAQVSAAFLTPLHLCEV 59
           AQI  I  ALS AR++T+      +AT C       A+  Y W+A +SAAF   LH+CEV
Sbjct: 8   AQIHNITCALSAARLATFEDAAGFSATTC-------AVEKYSWHALMSAAFFASLHVCEV 60

Query: 60  VLRNAVDDALGAKYGAAWPWAFAFEQSLP-ASSIAYGARHDLAKARAGLPIGQTGKVIAE 118
            +RNAVD+AL A YG  WPW   FE+SL       +  R +L +ARA +PIG TGKVIAE
Sbjct: 61  SMRNAVDNALCAVYGQDWPWNRNFERSLANPGGPHFQPRTELQRARAKMPIGATGKVIAE 120

Query: 119 LKFVFWQRMFAARHDGRLWNPHLRRVFPYLDPRRSVAQHRKAIHDALETIRQLRNRIAHH 178
           LKF FW  MF AR+ GR+W+  +   FP+       A  R+ IH  LE +R+ RNRIAHH
Sbjct: 121 LKFAFWCHMFTARYQGRIWDSQVLPCFPHFPHPTQPALVRQTIHAELECLRRFRNRIAHH 180

Query: 179 EPIFHRALEAEYQLIGQLIAWRSPQTFRWMHQHQQITTWLAARP 222
           EPI    L      I  LI WR P    W    + +T +L  +P
Sbjct: 181 EPILSDPLPHLQASIQSLIHWRCPDLAHWHGTWETVTRYLRIKP 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.135    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,345
Number of extensions: 30681
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)