BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0152.p (215 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase [H... 375 e-105 gi|300313332|ref|YP_003777424.1| stringent starvation transcript... 68 5e-13 >gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase [Herbaspirillum seropedicae SmR1] Length = 215 Score = 375 bits (962), Expect = e-105, Method: Compositional matrix adjust. Identities = 177/215 (82%), Positives = 197/215 (91%) Query: 1 MTTLYSYFRSSASYRVRIALNIKGVAYETAAVHLLNQGGEQLLPAFTQLNPHALVPVLAD 60 MTTLYSYFRSSASYRVRIAL++K + YET VHLLNQGGEQLLPAFT++NPHALVPVLA+ Sbjct: 1 MTTLYSYFRSSASYRVRIALHLKDLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAE 60 Query: 61 QGKLLTQSMAMLEYLEERYPTPSLLPGDAFARAHIRELSLAIACEIHPLNNLRVLRYLKH 120 +G ++QS+AMLE LEER+PTPSLLPGDAF RAHIR LSLAIAC+IHPLNNLRVL+YLK Sbjct: 61 EGHYVSQSLAMLELLEERHPTPSLLPGDAFQRAHIRALSLAIACDIHPLNNLRVLKYLKR 120 Query: 121 ALAVDEAQKTAWIQHWIKLGFTALEQQLAADTTRGHFCVGDAPTMADCFLIPQIFNARRF 180 L +D+ +K AWI HWI LGFTALE+QLAADTTRGHFCVGDAPTMADC L+PQIFNARRF Sbjct: 121 ELGMDDERKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNARRF 180 Query: 181 EVDMAPYPTLCAIEAACNALPAFEQAHPAQQPDAA 215 EVDMAPYPTLCAIE AC+ALPAF+QAHPAQQPDAA Sbjct: 181 EVDMAPYPTLCAIEQACHALPAFQQAHPAQQPDAA 215 >gi|300313332|ref|YP_003777424.1| stringent starvation transcription regulator A protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 22/189 (11%) Query: 1 MTTLYSYFRSSASYRVRIALNIKGVAYETAAVHLLNQGGEQLLPAFTQLNPHALVPVLAD 60 M LYS S R R+ L KG+ +E V L N+ + + +NP+ VP+L + Sbjct: 1 MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPED-----ISVMNPYGQVPILVE 55 Query: 61 QGKLLTQSMAMLEYLEERYPTPSLLPGDAFARAHIRELSLAIACE----IHPLNNLRVLR 116 + +L +S + EY++ER+P P L+P D RA R + E +H L N Sbjct: 56 RDLVLYESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLEN----- 110 Query: 117 YLKHALAVDEAQKTAWIQHWIKLGFTALEQQLAADTTRGHFCVGDAPTMADCFLIPQIFN 176 + + A +++Q+ A ++ I+ T QLA + + +GD +M D L P ++ Sbjct: 111 --EKSKAAEKSQEKA--RNEIRDRLT----QLAPLFLKNKYMLGDEFSMLDVALAPLLWR 162 Query: 177 ARRFEVDMA 185 + ++++ Sbjct: 163 LDHYGIELS 171 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 710,224 Number of extensions: 28901 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 3 Length of query: 215 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 134 Effective length of database: 1,236,335 Effective search space: 165668890 Effective search space used: 165668890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)