BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0149.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310449|ref|YP_003774541.1| 4-hydroxybenzoate transporter t...   358   e-100
gi|300310645|ref|YP_003774737.1| major facilitator superfamily b...   104   5e-24
gi|300310481|ref|YP_003774573.1| major facilitator superfamily p...    83   2e-17

>gi|300310449|ref|YP_003774541.1| 4-hydroxybenzoate transporter
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score =  358 bits (918), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/198 (91%), Positives = 193/198 (97%)

Query: 1   MPVAALFRDGRAAVTVLLWLISFMNLINLYFLSNWLPTLIRDAGYSTSMAVLIGTSLQVG 60
           MPVAALFRDGRA VTVLLWLISFMNLINLYFLSNWLPTLIRDAGYSTSMAVLIGTSLQVG
Sbjct: 250 MPVAALFRDGRAGVTVLLWLISFMNLINLYFLSNWLPTLIRDAGYSTSMAVLIGTSLQVG 309

Query: 61  GVVGTLTLGRFINRFGFTRVLGTCFLLACVSIALIGKVAAMPVLLFLAVIVAGFCIVGGQ 120
           GV+GTL+LGRFI RFGFTRVLG+CFLLAC+SIALIGK+A +P LLF+AVIVAGFCIVGGQ
Sbjct: 310 GVIGTLSLGRFIQRFGFTRVLGSCFLLACLSIALIGKLATVPALLFVAVIVAGFCIVGGQ 369

Query: 121 PAVNALAGTFYPTTLRSTGIGWALGIGRIGSVVGPVIGGQLIALQWSNGSLFIAAAVPAL 180
           PAVNALAGTFYPTTLRSTGIGWALGIGRIGSVVGPVIGGQLIALQW+N SLF+AAAVPAL
Sbjct: 370 PAVNALAGTFYPTTLRSTGIGWALGIGRIGSVVGPVIGGQLIALQWTNASLFLAAAVPAL 429

Query: 181 ISALTIARLHRTSRGVSA 198
           ISALTIARLHRT++GVSA
Sbjct: 430 ISALTIARLHRTAQGVSA 447


>gi|300310645|ref|YP_003774737.1| major facilitator superfamily
           benzoate permease [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  104 bits (260), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 112/185 (60%), Gaps = 1/185 (0%)

Query: 2   PVAALFRDGRAAVTVLLWLISFMNLINLYFLSNWLPTLIRDAGYSTSMAVLIGTSLQVGG 61
           P+  LF+  RA  T+++W+  F  L+ +Y L +WLP L+  AGYS   ++    +L  GG
Sbjct: 241 PMLHLFKQDRAVGTLMIWVSFFCCLLMVYALGSWLPKLMASAGYSLGSSLSFLLALNFGG 300

Query: 62  VVGTLTLGRFINRFGFTRVLGTCFLLACVSIALIGKVAAMPVLLFLAVIVAGFCIVGGQP 121
           VVG +  G   +RF   +V+ + F +  V+IAL+G  +  PVL +L +IVAG   +G Q 
Sbjct: 301 VVGAIGGGWLGDRFTLPKVVVSFFTVGTVAIALLGFNSPTPVL-YLLIIVAGATTIGTQI 359

Query: 122 AVNALAGTFYPTTLRSTGIGWALGIGRIGSVVGPVIGGQLIALQWSNGSLFIAAAVPALI 181
            + A    FYP  +RSTG+GWA G+GR G++VGP++GG L+A        F+  A+P L+
Sbjct: 360 LLYANTAQFYPLAIRSTGLGWASGVGRSGAIVGPLLGGALMAAALPLKMNFLVFAIPGLV 419

Query: 182 SALTI 186
           +AL +
Sbjct: 420 AALAM 424


>gi|300310481|ref|YP_003774573.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 82.8 bits (203), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 3/189 (1%)

Query: 5   ALFRDGRAAVTVLLWLISFMNLINLYFLSNWLPTLIRDAGYSTSMAVLIGTSLQVGGVVG 64
           ALF  G+A  T+ LW+  FMNL+ +Y   +WLPT++   G S S+A    T+   GGV G
Sbjct: 254 ALFASGQARDTMALWVAFFMNLLAVYSAFSWLPTMLAGEGLSPSVAGAGLTAYNFGGVFG 313

Query: 65  TLTLGRFINRFGFTRVLGTCFLLACVSIALIG--KVAAMPVLLFLAVIVAGFCIVGGQPA 122
            L    FI RFG    +  C L A  S   +    VA+   LL + + + G  +   Q  
Sbjct: 314 ALLCALFITRFGSRLPMLLCCLAATASALFLRSLDVASQTTLLVVGIGLHGLFVNAVQST 373

Query: 123 VNALAGTFYPTTLRSTGIGWALGIGRIGSVVGPVIGGQLIALQWSNGSL-FIAAAVPALI 181
           + AL    YPT +R+TG   AL  GR+G+++    G  +I    + G L  +A A+  + 
Sbjct: 374 MYALCAYIYPTQVRATGTAAALAFGRLGAILSAFAGALVITQGGAAGYLAMLAGAMLMVF 433

Query: 182 SALTIARLH 190
            AL + R H
Sbjct: 434 VALLVVRKH 442


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 623,650
Number of extensions: 26303
Number of successful extensions: 235
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 3
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)