BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0146.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum serope...   361   e-101
gi|300312950|ref|YP_003777042.1| lipase [Herbaspirillum seropedi...    94   1e-20

>gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score =  361 bits (927), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 200/275 (72%), Gaps = 41/275 (14%)

Query: 1   MNIYRDYDREALDEQYNVRLRITDFQAYFDRFAREGEAVRQAHPHLTDVPYGEDALQTLD 60
           M IYRDY  E LD QYNVR R+ DFQ YFDRFAR+GEA RQAHPHL D+PYGE+ LQ++D
Sbjct: 1   MKIYRDYTSEELDAQYNVRARVPDFQDYFDRFARQGEAARQAHPHLADLPYGEETLQSID 60

Query: 61  FFPGRSNGRPLLVFIHGGYWRSLDKHQFSQLALPYLAQDINVALINYRLAPQVRMGDIAA 120
           FFP  SNGRPLLVFIHGGYWRSLDKHQFS LALPYL QDINVALINYRLAPQVRMGDIAA
Sbjct: 61  FFPAHSNGRPLLVFIHGGYWRSLDKHQFSHLALPYLEQDINVALINYRLAPQVRMGDIAA 120

Query: 121 DCGRALRMLYAKX-----------------------------------------IYDLEP 139
           DCGRALR+L+AK                                          +YDLEP
Sbjct: 121 DCGRALRLLHAKAPALRVDANAIWLMGHSAGAHLACVIAALRAAPVRGVCALSGLYDLEP 180

Query: 140 VRLSYLNEVLHLSPSDAQQASPQLLAMPNGVQALLCAGDDESAEFLRQRDFYAATLRQSG 199
           +RLSYLNE LHLSP+D QQASP LLAMP+GV+A+LCAG  ES EFLRQRD YAA LRQSG
Sbjct: 181 IRLSYLNEALHLSPADVQQASPLLLAMPDGVRAVLCAGGQESEEFLRQRDVYAANLRQSG 240

Query: 200 HAVEVLPLPGQHHLSVVDVAADEGSVLTRTMLKMM 234
           H VEV+     HHLS++DVAAD  S  TRT+L+MM
Sbjct: 241 HQVEVVEAAQAHHLSIIDVAADGQSAFTRTVLRMM 275


>gi|300312950|ref|YP_003777042.1| lipase [Herbaspirillum seropedicae
           SmR1]
          Length = 289

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 111/262 (42%), Gaps = 47/262 (17%)

Query: 16  YNVRLRITDFQAYFDRFAREGEAVRQAHPHLTDVPYGEDALQTLDFFPGRSNGRPLLVFI 75
           YN++    DF     ++ +   A+       +D+ YG+  LQ  DF+      RPLLVFI
Sbjct: 26  YNLKAAFPDFPQVLQQWQQATAAIADTLLTESDISYGDAPLQRFDFYRAEGAQRPLLVFI 85

Query: 76  HGGYWRSLDKHQFSQLALPYLAQDINVALINYRLAPQVRMGD------------------ 117
           HGGYW+  DK     +A PY+   I+VA+INY LAPQ R+ D                  
Sbjct: 86  HGGYWQGGDKRDIGFIAAPYVKAGISVAVINYSLAPQARIEDMVKEVQACLSTIAQQAER 145

Query: 118 ----------------------IAADCGR-ALRMLYA-KXIYDLEPVRLSYLNEVLHLSP 153
                                 +AA  GR  ++ ++A   ++DL P+  + LN+ L L  
Sbjct: 146 LGIDVDRISLMGHSAGGHLAAFVAAQPGRMPVQAVFAISGVFDLAPLIPTSLNKALTLDQ 205

Query: 154 SDAQQASPQLLAMPNGVQALLCAGDDESAEFLRQRDFYAATLRQ-SGHAVEVLPLPGQHH 212
             A   SP L   P   +     G+ E+ +F  Q    A    Q   H V    +P  HH
Sbjct: 206 VRADALSPVLQTGPAQTRVHTIIGELETLQFHLQAAVMANCWPQVVAHHV----VPDTHH 261

Query: 213 LSVVDVAADEGSVLTRTMLKMM 234
            +V+   AD  S + R ++  M
Sbjct: 262 YTVLFPLADADSSVCRAVIAEM 283


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 742,851
Number of extensions: 31333
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 3
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)