BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0144.p
         (472 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310445|ref|YP_003774537.1| phospholipase D family protein ...   855   0.0  
gi|300309580|ref|YP_003773672.1| phosphatidylserine/phosphatidyl...   137   3e-33

>gi|300310445|ref|YP_003774537.1| phospholipase D family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/472 (90%), Positives = 449/472 (95%)

Query: 1   MTNKKMRLRSWSAAGLVLLLSSVMLAACSSLPTIVPDMDTQSARTIQMKGGRGVLSEAQA 60
           MTNK ++ R W A  LVL   S +L++CSSLPTIVPDMDTQSARTIQMKGGRGVLSEAQ+
Sbjct: 1   MTNKNIKPRRWCATLLVLAGLSALLSSCSSLPTIVPDMDTQSARTIQMKGGRGVLSEAQS 60

Query: 61  KAALDKLRAQNADNTLLDRHVAIEGAITGSPLVTGNKVTLLIDGPATYASMQQAIQAARY 120
           KA L+KLRAQNADNTLLDRHVAIEGAITGSPLVTGNKVTLLIDGPATYASMQQAIQAARY
Sbjct: 61  KAVLEKLRAQNADNTLLDRHVAIEGAITGSPLVTGNKVTLLIDGPATYASMQQAIQAARY 120

Query: 121 HINMETYIMEDDEVGRQFADLLIAMQKKGVQVNLMYDSVGSINTPREFFQPLIDAGVHVL 180
           HINMETYIMEDDEVGRQFADLLIAMQ KGVQVNLMYDSVG++NTPR FFQP+IDAG+ VL
Sbjct: 121 HINMETYIMEDDEVGRQFADLLIAMQNKGVQVNLMYDSVGALNTPRTFFQPMIDAGIQVL 180

Query: 181 EFNPLNPTQLRKDWAVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSTRKKKPQLNKD 240
           E+NPLNPTQLRKDW VNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSTRKKKP++N +
Sbjct: 181 EYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSTRKKKPRVNAE 240

Query: 241 GEQIPWRDTQVRIDGPVALEFQKLFIETWGKQRGPDLGDHRYFPPVAPAGNEIVRAIGSS 300
           GEQIPWRDTQVRIDGPVALEFQKLF++TW KQRGP LGDHRYFP VAPAGNEIVRAIGSS
Sbjct: 241 GEQIPWRDTQVRIDGPVALEFQKLFVDTWNKQRGPALGDHRYFPTVAPAGNEIVRAIGSS 300

Query: 301 PDDPYSIIYATFISAIQHAESSIYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDS 360
           PDDPYS+IYATFISAIQHAE +IYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDS
Sbjct: 301 PDDPYSVIYATFISAIQHAEKAIYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDS 360

Query: 361 SLVLYASRSFYSELLEAGVRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEIN 420
           SLVLYASRSFY ELLEAG+RIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEIN
Sbjct: 361 SLVLYASRSFYQELLEAGIRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEIN 420

Query: 421 AVILSPQFGAQNKTMFDRDLGASKEITKEQWEQRPISERMKEFGASVWSRLL 472
           AVILSPQFG Q K+MFDRDLGASKEITKEQWEQRPISERMKEFGASVW+RLL
Sbjct: 421 AVILSPQFGVQMKSMFDRDLGASKEITKEQWEQRPISERMKEFGASVWARLL 472


>gi|300309580|ref|YP_003773672.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 162/349 (46%), Gaps = 35/349 (10%)

Query: 95  GNKVTLLIDGPATYASMQQAIQAARYHINMETYIMEDDEVGRQFADLLIAMQKKGVQVNL 154
           GN++ LL  G   Y ++  AI AAR  I +ETYI   D+ G    + L     +GV V +
Sbjct: 9   GNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAAGRGVVVYV 68

Query: 155 MYDSVGS-INTPREFFQPLIDAGVHVLEFNPLNPTQLRKDWAVNQRDHRKLLVVDGKTAF 213
           + D +G+      +    L  AGV    FNP      R+  A   R HRKL VVD + AF
Sbjct: 69  INDWLGTGRENTNKLHLALSAAGVQHRSFNPW----FRRGVA---RSHRKLCVVDRQVAF 121

Query: 214 VGGINISS-VYSSGSFSTRKKKPQLNKDGEQIPWRDTQVRIDGPVALEFQKLFIETW--- 269
           VGG+NI+  + S     T    P+         W D  V I GP+  E  +     W   
Sbjct: 122 VGGLNINDDMVSDRDHMTPLPAPR---------W-DFAVSILGPLVQEIYREVQAQWLRV 171

Query: 270 ------GKQRGPDLGDHRYFPPVAPAGNEIVRAIGSSPDDPYS--IIYATFISAIQHAES 321
                  + R      H +  PV    ++  +A     D+  +   I   ++ A+  A  
Sbjct: 172 GHMKLKARWRNFKRLRHGHSGPV----HDQTQAALVVRDNFRNRRTIQRAYLQALGRARE 227

Query: 322 SIYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDSSLVLYASRSFYSELLEAGVRI 381
           S +L N YF P  ++R +L++AA RGV V L+L       +    + SFY +LL AGVRI
Sbjct: 228 SAFLANPYFAPGRKMRRALEEAAMRGVKVTLLLGV-GQFMMQDAVAHSFYPKLLRAGVRI 286

Query: 382 YERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPQFGA 430
            E     LH+K A++D  W+T+GS+N D  S   NQE N V+  P F  
Sbjct: 287 IEYTRTELHAKVAVVDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAG 335


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,403,571
Number of extensions: 58242
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 3
Length of query: 472
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,198,455
Effective search space: 459008265
Effective search space used: 459008265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)