BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0143.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310444|ref|YP_003774536.1| signal peptide protein [Herbasp...   513   e-147

>gi|300310444|ref|YP_003774536.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  513 bits (1320), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/305 (82%), Positives = 274/305 (89%), Gaps = 4/305 (1%)

Query: 9   KESGLRSMLSRLTSRLLLAATCALAV----GSWAHAQTQTGAVAMKSRYEELQGELSNNG 64
           +ES LRS LSRL+  L+  A  AL +     + A  QTQ G  AMKSRYEELQGELSNN 
Sbjct: 4   EESRLRSTLSRLSRPLMACAALALVLCGAAQAQAQNQTQAGMAAMKSRYEELQGELSNNA 63

Query: 65  YHRPLYLNSREEGGNVKGDIYAVLSYPFAQVRESLDNPDHWCDILILHLNTKYCRMMREN 124
           Y RPLYLNSRE+   VKGDIYAVL+YPFAQVRE+LD P+HWCDILILHLNTKYCR++RE 
Sbjct: 64  YQRPLYLNSREQDSTVKGDIYAVLAYPFAQVREALDGPEHWCDILILHLNTKYCRLLREG 123

Query: 125 GKTTLRMQVGKKTEQDLNDTYRVDLRYHGGASAADYFSSSMLADKGPLDTSNYRIEIEAI 184
           GKTTLRMQVGKKTEQDLNDTYRVDLRYHGG+SAA+YFSSSMLADKGPLDTSNYRIEIEAI
Sbjct: 124 GKTTLRMQVGKKTEQDLNDTYRVDLRYHGGSSAAEYFSSSMLADKGPLDTSNYRIEIEAI 183

Query: 185 PLDDKRSFLHFSYAYSYGMASKLALRAYLMTAGRDKVGFSVVKREANGQPQYVSGSRATV 244
           PLD++RSFLHFSYAYSYGMAS+LALRAYLMT GRDKVGFSVVKR+ANGQ QYVSGSRATV
Sbjct: 184 PLDERRSFLHFSYAYSYGMASRLALRAYLMTVGRDKVGFSVVKRDANGQAQYVSGSRATV 243

Query: 245 ERNTMRYYLAIDAYLSGLEAPAGERLEKRLTAWYGATEQYPRQLHEVSREDYLSMKRKEV 304
           ERNTMRYYLAIDAYL+ LEAPAGERLEKRL AWYGATEQYPRQLHE++RE+YLSMKRKEV
Sbjct: 244 ERNTMRYYLAIDAYLAALEAPAGERLEKRLAAWYGATEQYPRQLHELTREEYLSMKRKEV 303

Query: 305 ARQQK 309
           ARQQK
Sbjct: 304 ARQQK 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 868,119
Number of extensions: 34516
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)