BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0142.p (296 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310443|ref|YP_003774535.1| LysR family transcription regul... 577 e-166 gi|300309845|ref|YP_003773937.1| LysR family transcription regul... 318 2e-88 gi|300313122|ref|YP_003777214.1| transcription regulator protein... 149 3e-37 gi|300314051|ref|YP_003778143.1| transcription regulator protein... 141 6e-35 gi|300313964|ref|YP_003778056.1| LysR family transcription regul... 129 3e-31 >gi|300310443|ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 577 bits (1487), Expect = e-166, Method: Compositional matrix adjust. Identities = 284/294 (96%), Positives = 292/294 (99%) Query: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR Sbjct: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 Query: 61 ITTAGESYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARTYPE 120 ITTAGE+YLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFAR+YPE Sbjct: 61 ITTAGEAYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPE 120 Query: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYKLKKP 180 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREY+L+KP Sbjct: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYRLRKP 180 Query: 181 ADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 ADLLGVKLIRSNVSVVQW+DWFGEFADVR PEQFAVRFDRAQMSLDAATQGLGVALESAT Sbjct: 181 ADLLGVKLIRSNVSVVQWADWFGEFADVRAPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 Query: 241 VAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQAEVQ 294 VAARH+EEKKLKP+FGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA+ Q Sbjct: 241 VAARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQADGQ 294 >gi|300309845|ref|YP_003773937.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 318 bits (816), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 152/289 (52%), Positives = 208/289 (71%) Query: 3 VLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVRIT 62 ++PPL +L AFEA+ARRKSF LAAAELHLT SA+SHQVARLE LG+RLFERS GV +T Sbjct: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 Query: 63 TAGESYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARTYPEIT 122 AG+SYL R+ GA+ AI +A+ D+R GV N+L IHS+PS ASLWLM R+ F + +P+I Sbjct: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 Query: 123 FNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYKLKKPAD 182 LSA+ S+FE+G+VD+DIR G+P+WP L +E + ER++P+ASP F+ +++ P D Sbjct: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD 180 Query: 183 LLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESATVA 242 L+ LI+S S++QW +WF +A PE+ A+RFDRA MS++AA QGLGV ES Sbjct: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFG 240 Query: 243 ARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 A + +L+PVF A+++ H+AV PA + RP V FL+WLRE++ Sbjct: 241 AVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREES 289 >gi|300313122|ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 145/289 (50%), Gaps = 7/289 (2%) Query: 4 LPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVRITT 63 LPP+ L AFEA AR SFA+AA EL +T SA+SH++ LE ++G RLF R + ++ Sbjct: 5 LPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSIGLSE 64 Query: 64 AGESYLARIQGAISAITAASMDVRQ-GVSNTLYIHSAPSIASLWLMARLNDFARTYPEIT 122 G YL ++ A+ +T M R V + + P+ A LM R+ DF + +PEI Sbjct: 65 FGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRHPEIV 124 Query: 123 FNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREY-KLKKPA 181 L + + L E D++IR+G N+P ++ E LFEE +ASPA+++ +K PA Sbjct: 125 VELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPMKSPA 184 Query: 182 DLLGVKLIRSNVSVVQWSDWF--GEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESA 239 DL L+RS + W WF D P +R D + L+A G GV L Sbjct: 185 DLKQATLLRSALE--PWQPWFEAAGLKDWVEPSA-GLRVDDLGLLLEAVRHGYGVGLTRQ 241 Query: 240 TVAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLR 288 A + ++ +F + A++ VY RP V F+ W++ Sbjct: 242 HFAEELLARGEIVELFDIRLRTPPHAYYVVYERAVRERPEVDTFISWMQ 290 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 141 bits (356), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 152/296 (51%), Gaps = 8/296 (2%) Query: 1 MAVLPPLPNLQAFEAVARR---KSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAH 57 MA L LPNL A A + F+ AA E+H+T A+SHQV LE LG++LF R Sbjct: 1 MADLRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGK 60 Query: 58 GVRITTAGESYLARIQGAISAITAASMDVR-QGVSNTLYIHSAPSIASLWLMARLNDFAR 116 + IT G+ + A I+ ++S I A+ +R Q L I + PS AS WL RL F Sbjct: 61 RISITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFID 120 Query: 117 TYPEITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAF--IRE 174 +PE+ L +A ++ L +D+ +R+G N+ GLV E L ++ P+A+P + R Sbjct: 121 AHPELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRS 180 Query: 175 YKLKKPADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGV 234 KL +PADL L+R + S W W E P + + + ++L A +G GV Sbjct: 181 KKLARPADLAHCSLLRVD-SRESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGV 239 Query: 235 ALESATVAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQ 290 AL +A++ I +L +F + AH+ V+ +P VAAF EW+ E+ Sbjct: 240 ALARHVIASQEISTGELVRLFDVV-VPSEDAHYFVHLPEALEKPGVAAFKEWIFEE 294 >gi|300313964|ref|YP_003778056.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 129 bits (323), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/311 (31%), Positives = 149/311 (47%), Gaps = 22/311 (7%) Query: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 M LPPL L+AFEA AR SF AA ELH+T SAVS QV LE++L +LF R + Sbjct: 1 MNKLPPLTALRAFEATARLLSFTAAADELHVTQSAVSRQVRILEAHLEQKLFVRLTRRIE 60 Query: 61 ITTAGESYLARIQGAISAITAASMDV---RQGVSNTLYIHSAPSIASLWLMARLNDFART 117 +T AG +Y +I+ A I AA + RQ +TL I P +ASLWL+ RL F R Sbjct: 61 LTRAGAAYFQQIRQAFERICAAGEQLHARRQ--RHTLTIGVLPGLASLWLVPRLELFWRE 118 Query: 118 YPEITFNLSAAHSQSNFELGEVDIDIRYG-IP---------------NWPGLVVEPLFEE 161 EI + A ++F +D+ I+ G +P +W L + LF + Sbjct: 119 NKEIDVRIVVATGAADFGRTTMDMSIQVGNLPGTTSQGLPLKKRMAVDWHDLRADLLFPD 178 Query: 162 RIVPLASPAFIREYKLKKPADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRA 221 +V L P R++ ++ ADL +LI + + W+ W + Q + + Sbjct: 179 ALVALCHPRLWRQHPVRSVADLSQHRLIHTAIRPDAWAHWLQQHGSRLGARQAGMECSQY 238 Query: 222 QMSLDAATQGLGVALESATVAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVA 281 ++L AA G G+AL + +A + +L+ +FG ++ + P AV Sbjct: 239 PVALQAAMNGEGIALVPSVLAESFDPQHRLRRLFG-GPTPSAGQYYLLTPGDRYDDSAVR 297 Query: 282 AFLEWLREQAE 292 F +WL QA+ Sbjct: 298 RFRQWLLMQAQ 308 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 856,938 Number of extensions: 33909 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 50 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 50 Length of query: 296 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 211 Effective length of database: 1,217,395 Effective search space: 256870345 Effective search space used: 256870345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)