BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0138.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease, d...   552   e-158
gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate tran...   270   1e-73
gi|300310180|ref|YP_003774272.1| TRAP-type C4-dicarboxylate tran...    61   1e-10

>gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease,
           dicarboxylate transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 618

 Score =  552 bits (1423), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 295/305 (96%), Positives = 299/305 (98%)

Query: 1   MSALSLEQPVTDDRSLAARLENWLGLAIEIPAAALVVGEVVVLLAGVIMRFIFNNPIPWA 60
           MSALSLEQPV D+RSLAARLE+WLGLAIEIPAAALVVGEV VLLAGVIMRFIFNNPIPWA
Sbjct: 1   MSALSLEQPVADERSLAARLEHWLGLAIEIPAAALVVGEVAVLLAGVIMRFIFNNPIPWA 60

Query: 61  DELASILFLWLANLGAAVALRRGTHMRTTVLVGFMSERGKAWAEALAIIAPCVMLLILMH 120
           DELASILFLWLANLGAAVALRRGTHMRTTVLVGFMSERGKAWAEALAIIAPCVMLLILMH
Sbjct: 61  DELASILFLWLANLGAAVALRRGTHMRTTVLVGFMSERGKAWAEALAIIAPCVMLLILMH 120

Query: 121 PMWEYAEDEMFVQTPALGWPNTVRAAAVAVGAALMIALSLLRISRQKLVDLAGVVVLLAV 180
           PMWEYAEDEMFVQTPALGWPNTVRAAAVAVGAALMIALSLLRISRQKLVDL GV+ LLAV
Sbjct: 121 PMWEYAEDEMFVQTPALGWPNTVRAAAVAVGAALMIALSLLRISRQKLVDLVGVLALLAV 180

Query: 181 VAGAMYLGAGWLQAIGNWNLVVFFGVVLGVSVLLGIPIAFCFGLATVAFMLTVTTSPLAV 240
           VAGAMYLGA WLQAIGNWNLVVFFG+VL VSVLLGIPIAFCFGLATVAFMLTVTTSPLAV
Sbjct: 181 VAGAMYLGAAWLQAIGNWNLVVFFGLVLAVSVLLGIPIAFCFGLATVAFMLTVTTSPLAV 240

Query: 241 VAGRFDEGMSSLILLAVPLFILLGHLVEMTGMAKAMVDFLASLLGHVRGGLNYVLLGAML 300
           VAGRFDEGMSSLILLAVPLFILLGHLVEMTGMAKAMVDFLASLLGHVRGGLNYVLLGAML
Sbjct: 241 VAGRFDEGMSSLILLAVPLFILLGHLVEMTGMAKAMVDFLASLLGHVRGGLNYVLLGAML 300

Query: 301 LVSGI 305
           LVSGI
Sbjct: 301 LVSGI 305


>gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate
           transport system dctQ-M fusion permease large permease
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  270 bits (689), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/268 (52%), Positives = 199/268 (74%), Gaps = 1/268 (0%)

Query: 39  EVVVLLAGVIMRFIFNNPIPWADELASILFLWLANLGAAVALRRGTHMRTTVLVGFMSER 98
           E VVLL GVI R+  ++P+ W+DELASILF+WL+ LGA +AL RG HMR T ++   SE+
Sbjct: 43  ETVVLLTGVIYRYALHDPLVWSDELASILFIWLSMLGAVLALDRGEHMRLTAIINKCSEK 102

Query: 99  GKAWAEALAIIAPCVMLLILMHPMWEYAEDEMFVQTPALGWPNTVRAAAVAVGAALMIAL 158
           G+ W E +A +  C+ +L+++HP  ++A ++M + TPAL  P+ +RAAA+ VGA LM+  
Sbjct: 103 GRIWLETVAALVVCIFVLMVIHPAVDHAVEQMPITTPALEIPDGLRAAALPVGAILMLLA 162

Query: 159 SLLRISRQKLVDLA-GVVVLLAVVAGAMYLGAGWLQAIGNWNLVVFFGVVLGVSVLLGIP 217
           ++ R++    + L    + ++AV+ GA++L    L  +GN+NL+VFF +++GV V  GIP
Sbjct: 163 AVSRMAAMTTMRLLLSALAVVAVIGGALWLAKPMLLGMGNYNLIVFFVLLIGVCVAGGIP 222

Query: 218 IAFCFGLATVAFMLTVTTSPLAVVAGRFDEGMSSLILLAVPLFILLGHLVEMTGMAKAMV 277
           IAF FG AT+A++   TT+PL +V  R DEGMSSLILL+VPLF+LLG L+EM+G+AK ++
Sbjct: 223 IAFAFGTATMAYLALATTAPLMIVVSRMDEGMSSLILLSVPLFVLLGSLLEMSGLAKTLI 282

Query: 278 DFLASLLGHVRGGLNYVLLGAMLLVSGI 305
           DF+A+LLGHVRGGL YVLLGAM LVSGI
Sbjct: 283 DFMAALLGHVRGGLQYVLLGAMFLVSGI 310


>gi|300310180|ref|YP_003774272.1| TRAP-type C4-dicarboxylate
           transport system large permease [Herbaspirillum
           seropedicae SmR1]
          Length = 426

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%)

Query: 213 LLGIPIAFCFGLATVAFMLTVTTSPLAVVAGRFDEGMSSLILLAVPLFILLGHLVEMTGM 272
           L G+PI+   GL  + F+ T+T  P+  VA +   G+    ++A+P FIL G+ +   G+
Sbjct: 15  LTGMPISISLGLTVLTFLFTMTEVPIQSVALKLFTGIEKFEIMAIPFFILAGNFLTHGGV 74

Query: 273 AKAMVDFLASLLGHVRGGL 291
           A+ M++F  S++GH  GGL
Sbjct: 75  ARRMINFATSMVGHWHGGL 93


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 671,972
Number of extensions: 20135
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)