BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0131.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase ...   636   0.0  
gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase ...    77   2e-15

>gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  636 bits (1641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/304 (99%), Positives = 303/304 (99%)

Query: 1   MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSF 60
           MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSF
Sbjct: 1   MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSF 60

Query: 61  EAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRV 120
           EAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRV
Sbjct: 61  EAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRV 120

Query: 121 PVINGLTNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNV 180
           PVINGLTNEQHPCQVLADVFTYIEH GSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNV
Sbjct: 121 PVINGLTNEQHPCQVLADVFTYIEHHGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNV 180

Query: 181 SSPKGYDIDPAQVSPGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGW 240
           S+PKGYDIDPAQVSPGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGW
Sbjct: 181 STPKGYDIDPAQVSPGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGW 240

Query: 241 IVDQAKMSRAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVH 300
           IVDQAKM+RAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVH
Sbjct: 241 IVDQAKMARAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVH 300

Query: 301 GRFD 304
           GRFD
Sbjct: 301 GRFD 304


>gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase
           catalytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 121/266 (45%), Gaps = 22/266 (8%)

Query: 48  VFEKNSTRTRLSFEAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRM-CDVIMIRTY 106
           +F +NSTRTR +FE    ++    I LN + S   +GE + D    ++ M  D+ ++R  
Sbjct: 58  LFFENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMFVVRHA 117

Query: 107 GQEIIERFAKH------SRVPVIN-GLTNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGD 159
                   AKH      S V V+N G     HP Q L D++T   ++       VA VGD
Sbjct: 118 QSGAPFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGD 177

Query: 160 ANNMLYSWLQAAEVFGFHVNVSSPKGYDIDPAQVSPGN---KNYTFFADPADACQDADLV 216
              +L+S +  +++      +  P+   I P  + P          F +  +  +D D++
Sbjct: 178 ---ILHSRVARSDIHAL-TTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVDVI 233

Query: 217 TTDVWTSMGFEAENNARLKA----FDGWIVDQAKMSRAKKDALFMHCLPAHRGEEVAAEV 272
              +   +  E  + A L +    F  + +   +++ AK DA+ MH  P +RG E+ + V
Sbjct: 234 ---IMLRLQNERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRGVEIDSAV 290

Query: 273 IDGPQSVVWEEAENRLHVQKALLEYL 298
            DG Q+V+  +    + V+ A++  +
Sbjct: 291 ADGAQAVILPQVTFGIAVRMAVMSIV 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 935,027
Number of extensions: 37191
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)