BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0127.p
         (436 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310765|ref|YP_003774857.1| Zn-dependent protease (chaperon...   782   0.0  

>gi|300310765|ref|YP_003774857.1| Zn-dependent protease (chaperone
           function) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 426

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/422 (94%), Positives = 408/422 (96%)

Query: 1   MSSLSFSVLFVVFLAISLGVRFWLASRHIRHVIAHRAAVPPEFAEKIPLSAHQKAADYTV 60
           MSSLSFSVLFV FLAISLGVRFWLASRHIRHV+AHRAAVP EFAEKIPL AHQKAADYTV
Sbjct: 1   MSSLSFSVLFVTFLAISLGVRFWLASRHIRHVLAHRAAVPAEFAEKIPLPAHQKAADYTV 60

Query: 61  ARTKFGLVTLIVNAAVLIGFTLLGGLQWLSSLLLGWTGEPGMVYQIALVAGFGLISGAVD 120
           ARTKFGLVTL+VNAAVLIGFTLLGGLQ LSSLLLGWTG PGM+YQIALVAGFGLISGAVD
Sbjct: 61  ARTKFGLVTLLVNAAVLIGFTLLGGLQALSSLLLGWTGGPGMLYQIALVAGFGLISGAVD 120

Query: 121 LPFDYYRQFKLEAGFGFNKMTRGLFFSDMIKQTLLGAVIGLPLLWVVLVLMEKAGALWWF 180
           LPFDYYRQF+LEAGFGFNKM+R LFFSDMIKQTLLGAVIGLPLLWVVL LMEKAGALWWF
Sbjct: 121 LPFDYYRQFRLEAGFGFNKMSRALFFSDMIKQTLLGAVIGLPLLWVVLALMEKAGALWWF 180

Query: 181 YTWIVLCAFQLLMLVIYPSFIAPLFNKFTALEDDSLRSRIEGLMQRVGFASKGLFVMDGS 240
           YTWIVLC FQLLMLVIYPSFIAPLFNKFTALEDDSLRSRIEGLMQRVGFASKGLFVMDGS
Sbjct: 181 YTWIVLCVFQLLMLVIYPSFIAPLFNKFTALEDDSLRSRIEGLMQRVGFASKGLFVMDGS 240

Query: 241 KRSAHGNAYFSGFGSGKRIVFFDTLLARLAPHEIEAVLAHELGHFKLKHIVKRVVVMFGL 300
           KRSAHGNAYFSGFGSGKRIVFFDTLLARLAPHEIEAVLAHELGHFKLKHIVKRVVVMF +
Sbjct: 241 KRSAHGNAYFSGFGSGKRIVFFDTLLARLAPHEIEAVLAHELGHFKLKHIVKRVVVMFAM 300

Query: 301 SLAFLALLGYLKGQAWFYTGLGVEPLLLGSNDAMALILFMLVLPIFTFLFSPLSSLSSRK 360
           SLAFLALLGYLK QAWFYTGLGVEPLL+GSNDAMALILFMLVLPIFTFL SPLSSLSSRK
Sbjct: 301 SLAFLALLGYLKQQAWFYTGLGVEPLLMGSNDAMALILFMLVLPIFTFLLSPLSSLSSRK 360

Query: 361 HEFEADAFAAQHTDAQDLVSALVKLYEDNASTLTPDPLHSAFYDSHPPASLRIQHLHAAI 420
           HEFEADAFAAQHT AQDLVSALVKLYEDNASTLTPDPLHSAFYDSHPPASLRI+ LH A+
Sbjct: 361 HEFEADAFAAQHTQAQDLVSALVKLYEDNASTLTPDPLHSAFYDSHPPASLRIRRLHGAL 420

Query: 421 AA 422
           AA
Sbjct: 421 AA 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,136,748
Number of extensions: 41971
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,203,190
Effective search space: 418710120
Effective search space used: 418710120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)