BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0119.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembran...   520   e-149
gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane p...    64   2e-11

>gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  520 bits (1338), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/302 (94%), Positives = 295/302 (97%)

Query: 1   VAAVNAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHDAAQGEIVNQIRDIVG 60
           +AA+NAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHDAAQGEIVNQIRDIVG
Sbjct: 16  MAAINAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHDAAQGEIVNQIRDIVG 75

Query: 61  TEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIPVAKRKSG 120
           TEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIP  KRKSG
Sbjct: 76  TEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIPAVKRKSG 135

Query: 121 LWQLARTRLLSFGLIIGLGFLLIISLVVSAALAALGRWWGGWFEGWQLLLQILNFVLSFV 180
           +WQLARTRLLSFGLI+GLGFLLIISLVVSAALAALGRWWGGWFEGWQL+LQ+LNFVLSFV
Sbjct: 136 VWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEGWQLVLQLLNFVLSFV 195

Query: 181 VFSTLFSMIYKFMPRVTLSWHDVWIGAVATTVLFIIGKYLIGLYLGSTGMTSGFGAAGSF 240
           VFSTLFSMIYKFMPRVTLSW DVWIGAVATTVLFIIGKYLIGLYLGSTGMTSGFGAAGSF
Sbjct: 196 VFSTLFSMIYKFMPRVTLSWRDVWIGAVATTVLFIIGKYLIGLYLGSTGMTSGFGAAGSF 255

Query: 241 ALLLLWIYYSAQIFLLGAEFTWIYANNFGSRAKRQRLVNTVEDHHVSIEQAQQVVRAGDN 300
           ALLLLWIYYSAQIFLLGAEFTWIYANNFGSRA RQ+LVNTVEDHHVS++QAQQVVRA + 
Sbjct: 256 ALLLLWIYYSAQIFLLGAEFTWIYANNFGSRALRQKLVNTVEDHHVSVQQAQQVVRASEG 315

Query: 301 PR 302
            R
Sbjct: 316 QR 317


>gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 121/265 (45%), Gaps = 33/265 (12%)

Query: 9   DDFAPSMGAAIAYYTIFSIAPMLVIAIAV--AGMLFGHDAAQGEIVNQIRDIVGTEGAFA 66
           +D  P +  ++ + TI S+ PML IA+A+  A  LF    A  E    + +++    A  
Sbjct: 32  EDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTFRASLE-AYFVENLMPKGVANT 90

Query: 67  IQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIPVAKRKSGLWQLAR 126
           I G L   +     + A G   V L++ +    S ++S  ++IWR+   K+   L Q   
Sbjct: 91  ILGYLNQFAAKSARISAVG--GVVLILTSVLTMSTIESVFNQIWRV---KKSRPLVQ--- 142

Query: 127 TRLLSFGLIIGLGFLLI-ISLVVSAALA-ALG------RWWGGWFEGWQLLLQILNFVLS 178
            R+L +  II LG LLI +S+ V++ L+ A G       W G  F           + L 
Sbjct: 143 -RVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASF-----------YTLV 190

Query: 179 FVVFSTL-FSMIYKFMPRVTLSWHDVWIGAVATTVLFIIGKYLIGLY-LGSTGMTSGFGA 236
            ++FSTL ++++Y  +P  T+ W D   G +   +   I K L  +Y L     T  +G 
Sbjct: 191 SLMFSTLAYTLLYSTVPNQTVDWRDALAGGLLAGIGLEIAKRLFAVYILKFPTYTMVYGT 250

Query: 237 AGSFALLLLWIYYSAQIFLLGAEFT 261
                + L+WIY    I L GA  T
Sbjct: 251 VAVLPIFLVWIYMMWMITLFGALLT 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 712,306
Number of extensions: 22961
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)