BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0107.p
         (142 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310780|ref|YP_003774872.1| hypothetical protein Hsero_1448...   183   5e-48

>gi|300310780|ref|YP_003774872.1| hypothetical protein Hsero_1448
           [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  183 bits (464), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 116/146 (79%), Gaps = 6/146 (4%)

Query: 1   MNHDDNSIPLLTEIIPLAPAAPPAP-----DYAAPMQPGAFHTQPANTHYQAPAAAAPAM 55
           MN DDNSIPLLTE+IPLAPAAP        DYA P +PGAFHTQPA T YQA    AP +
Sbjct: 1   MNQDDNSIPLLTEVIPLAPAAPAHTPARAPDYAPPARPGAFHTQPAATSYQATPPGAPIV 60

Query: 56  TPLPPVTPAAEQYRQWEQEIRENVLQSLLERVDTVLHQHLQDQMALALDHLSDIVMQRVR 115
            PLP VTPAAEQYRQWEQEIRENVLQSLLE+VDTVL Q LQDQMAL LD+LS ++ QR++
Sbjct: 61  APLP-VTPAAEQYRQWEQEIRENVLQSLLEQVDTVLQQQLQDQMALVLDNLSTVLTQRIK 119

Query: 116 EGLRDALTETVERAVAEEMARFTSSK 141
           + L +AL ETV RAVAEEMARF S+K
Sbjct: 120 DSLHEALAETVTRAVAEEMARFASTK 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 270,393
Number of extensions: 6759
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 66
Effective length of database: 1,260,010
Effective search space: 83160660
Effective search space used: 83160660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)