BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0105.p
         (712 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillu...  1397   0.0  

>gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillum
           seropedicae SmR1]
          Length = 691

 Score = 1397 bits (3616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 677/690 (98%), Positives = 684/690 (99%)

Query: 23  NTTDIAANPLLDFSGYAQFDAIQPEHVTPALDKLLADASRLVTELEAPMAEVTWDNFVEP 82
            TTDIAANPLLDFSGYAQFDAIQPEHVTPALDKLLADASRLVTELEAPMAEVTWDNFV+P
Sbjct: 2   TTTDIAANPLLDFSGYAQFDAIQPEHVTPALDKLLADASRLVTELEAPMAEVTWDNFVKP 61

Query: 83  LESATEKLGRAWSVVGHLNSVMDTPALRATYNENQPRLVEFWTALGQNLALFEKYKALQA 142
           LESATEKLGRAWSVVGHLNSVMDTPALRATYNENQPRLVEFWT+LGQNLALFEKYKALQA
Sbjct: 62  LESATEKLGRAWSVVGHLNSVMDTPALRATYNENQPRLVEFWTSLGQNLALFEKYKALQA 121

Query: 143 SPAFASLSAARRKVVDNAVRDFRLSGAELADDKKERFAEIQEKQAMLTTRFSENVLDATN 202
           SPAFASLSAARRKVVDNAVRDFRLSGAELA+DKKERFAEIQEKQAMLTTRFSENVLDATN
Sbjct: 122 SPAFASLSAARRKVVDNAVRDFRLSGAELAEDKKERFAEIQEKQAMLTTRFSENVLDATN 181

Query: 203 DFALFVEDEAELSGLPADVKQAARAAAEKDGKPGYKFTLHFPSYFPVLQYADNRALREKI 262
           DFALFVEDEAELSGLPADVKQAARAAAEKDGKPGYKFTLHFPSYFPVLQYADNRALREKI
Sbjct: 182 DFALFVEDEAELSGLPADVKQAARAAAEKDGKPGYKFTLHFPSYFPVLQYADNRALREKI 241

Query: 263 YRANATKASELGVKPEWDNSGNIDQILQLRKEEAQLLGYANFAEVSLVAKMAKSPSEVIA 322
           YRANATKASELG KPEWDNS NIDQILQLRKEEAQLLGYANFAEVSLVAKMAKSPSEVIA
Sbjct: 242 YRANATKASELGAKPEWDNSANIDQILQLRKEEAQLLGYANFAEVSLVAKMAKSPSEVIA 301

Query: 323 FLEDLGQRARPFGQKDYEELKTFAREKLGLDELKAWDSTYASEKLREQRYAFSEQEVKQY 382
           FLEDLGQRARPFGQKDYEELK FAREKLGLDELKAWDSTYASEKLREQRYAFSEQEVKQY
Sbjct: 302 FLEDLGQRARPFGQKDYEELKAFAREKLGLDELKAWDSTYASEKLREQRYAFSEQEVKQY 361

Query: 383 FPEPKVVGGLFQVAQQLFGVQIKPDTAPVWHKDVKFYRIERDGQLVGQFYLDLYARSGKR 442
           FPEPKVVGGLFQVAQQLFGVQIKPD+APVWHKDVKF+RIERDGQLVGQFYLDLYARSGKR
Sbjct: 362 FPEPKVVGGLFQVAQQLFGVQIKPDSAPVWHKDVKFFRIERDGQLVGQFYLDLYARSGKR 421

Query: 443 GGAWMDDARARRLTAQGVQTPIAYLVCNFTEPAVVDGVAKPALFTHDEVITLFHEFGHGL 502
           GGAWMDDARARRLTAQGVQTPIAYLVCNFTEPAVVDGVAKPALFTHDEVITLFHEFGHGL
Sbjct: 422 GGAWMDDARARRLTAQGVQTPIAYLVCNFTEPAVVDGVAKPALFTHDEVITLFHEFGHGL 481

Query: 503 HHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQQLTAHAETGEPLPRALYDK 562
           HHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQQLTAHA+TGEPLPRALYDK
Sbjct: 482 HHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQQLTAHADTGEPLPRALYDK 541

Query: 563 MIAAKNFQSGLQMLRQVEFSLFDMLIHHEYEAGGQQTVQQLLDSVRDRVAVIRPPEFNRF 622
           MIAAKNFQSGLQMLRQVEFSLFDMLIHHEYE GG QTVQQLLDSVRDR+AVIRPPEFNRF
Sbjct: 542 MIAAKNFQSGLQMLRQVEFSLFDMLIHHEYEVGGNQTVQQLLDSVRDRIAVIRPPEFNRF 601

Query: 623 QHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAGSGNVISLETGRRFQQEILAVG 682
           QHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAGSGNVISLETGRRFQQEILAVG
Sbjct: 602 QHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAGSGNVISLETGRRFQQEILAVG 661

Query: 683 GSRPAIESFKAFRGREPSIDALLRHSGMAA 712
           GSRPAIESFKAFRGREPSIDALLRHSGMAA
Sbjct: 662 GSRPAIESFKAFRGREPSIDALLRHSGMAA 691


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,183,102
Number of extensions: 91325
Number of successful extensions: 307
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 620
Effective length of database: 1,184,250
Effective search space: 734235000
Effective search space used: 734235000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)