BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0101.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310785|ref|YP_003774877.1| pyruvate dehydrogenase E1 compo...   371   e-104
gi|300313265|ref|YP_003777357.1| pyruvate dehydrogenase E1 compo...   176   2e-45

>gi|300310785|ref|YP_003774877.1| pyruvate dehydrogenase E1
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 898

 Score =  371 bits (952), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/191 (94%), Positives = 183/191 (95%), Gaps = 3/191 (1%)

Query: 1   MSAQIDQVLAQAANDPDVMETQEWLDALEAVIEKEGPDRAHYLMERMVDLARRRGAHIPF 60
           MSAQIDQVLAQAANDPDVMETQEWLDALEAVIEKEGPDRAHYLMERMVDLARRRGAHIPF
Sbjct: 1   MSAQIDQVLAQAANDPDVMETQEWLDALEAVIEKEGPDRAHYLMERMVDLARRRGAHIPF 60

Query: 61  SSNTAYVNTIPADQGEHCPGNLEYEERLRSWMRWNAMAMVVKANRVDGDLGGHLSSFASL 120
           SSNTAYVNTIPADQGEHCPGNLEYEERLRSWMRWNAMAMVVKANRVDGDLGGHLSSFASL
Sbjct: 61  SSNTAYVNTIPADQGEHCPGNLEYEERLRSWMRWNAMAMVVKANRVDGDLGGHLSSFASL 120

Query: 121 ANMLGIGFNHFWHAPTEEHGGDLLYIQGHSSPGIYARAFLEGRLTEDQLIHFRREADG-- 178
           ANMLGIGFNHFWHAPTE+HGGDLLYIQGHSSPGIYARAFLEGRLTEDQLIHFRREADG  
Sbjct: 121 ANMLGIGFNHFWHAPTEDHGGDLLYIQGHSSPGIYARAFLEGRLTEDQLIHFRREADGHG 180

Query: 179 -KRRPWPVVLP 188
               P P ++P
Sbjct: 181 LSSYPHPKLMP 191


>gi|300313265|ref|YP_003777357.1| pyruvate dehydrogenase E1
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 893

 Score =  176 bits (445), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 120/169 (71%), Gaps = 3/169 (1%)

Query: 15  DPDVMETQEWLDALEAVIEKEGPDRAHYLMERMVDLARRRGAHIPFSSNTAYVNTIPADQ 74
           D D  ETQEWL AL++V+ + GP+RA +L+ R+   A++ G +   + NT YVNTI  +Q
Sbjct: 14  DIDSQETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDARNTPYVNTIRPEQ 73

Query: 75  GEHCPGNLE---YEERLRSWMRWNAMAMVVKANRVDGDLGGHLSSFASLANMLGIGFNHF 131
               PG  +    EER+ S MRWNA+AMVV+ANR  G+LGGH++SFAS A++  +GFNHF
Sbjct: 74  EPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASFASAADLFEVGFNHF 133

Query: 132 WHAPTEEHGGDLLYIQGHSSPGIYARAFLEGRLTEDQLIHFRREADGKR 180
           + A  E+  GD++Y Q HS+PGIYARAFLEG L+ED L ++RRE + KR
Sbjct: 134 FRARDEQFAGDVVYFQPHSAPGIYARAFLEGALSEDDLAYYRREIEAKR 182


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 795,586
Number of extensions: 32218
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)