BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0099.p
         (135 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransfer...   144   2e-36
gi|300310787|ref|YP_003774879.1| 2-oxoglutarate dehydrogenase E3...   117   2e-28

>gi|300310786|ref|YP_003774878.1| dihydrolipoamide
          acetyltransferase component of pyruvate dehydrogenase
          complex [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  144 bits (364), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/80 (95%), Positives = 78/80 (97%)

Query: 1  MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK 60
          MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK
Sbjct: 1  MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK 60

Query: 61 VKVGDKVAEGSLLLMVEAAG 80
          VKVGDKVAEGSLL++VE  G
Sbjct: 61 VKVGDKVAEGSLLVIVEGEG 80



 Score =  118 bits (296), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 70/74 (94%)

Query: 4   VEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIKVKV 63
           VE++VPDIGDFKEVEVIEVMVKVGDT+K +QSL+TVESDKASMEIPSS AGV+KE+KVK+
Sbjct: 120 VEIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVKL 179

Query: 64  GDKVAEGSLLLMVE 77
           GDKV++GS++  +E
Sbjct: 180 GDKVSKGSIIATIE 193


>gi|300310787|ref|YP_003774879.1| 2-oxoglutarate dehydrogenase E3
          component lipoamide dehydrogenase [Herbaspirillum
          seropedicae SmR1]
          Length = 596

 Score =  117 bits (294), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/81 (93%), Positives = 79/81 (97%)

Query: 1  MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK 60
          MS  EVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKE+K
Sbjct: 1  MSLSEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEVK 60

Query: 61 VKVGDKVAEGSLLLMVEAAGE 81
          VKVGDKVAEGSLLL+VEAAG+
Sbjct: 61 VKVGDKVAEGSLLLLVEAAGQ 81


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 223,434
Number of extensions: 4840
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 4
Length of query: 135
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,260,010
Effective search space: 74340590
Effective search space used: 74340590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 125 (52.8 bits)