BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0096.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310787|ref|YP_003774879.1| 2-oxoglutarate dehydrogenase E3...   493   e-141
gi|300312271|ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3...   125   4e-30
gi|300312608|ref|YP_003776700.1| glutathione reductase [Herbaspi...    94   1e-20

>gi|300310787|ref|YP_003774879.1| 2-oxoglutarate dehydrogenase E3
           component lipoamide dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score =  493 bits (1269), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/258 (94%), Positives = 249/258 (96%)

Query: 17  SFGGSTDVQCDVMVLGGGPGGYSAAFRAADLGLNTVIVERDATLGGVCLNVGCIPSKALL 76
           SFGGS DVQCDVMVLGGGPGGYSAAFRAADLGLNTVIVER+ATLGGVCLNVGCIPSKALL
Sbjct: 118 SFGGSADVQCDVMVLGGGPGGYSAAFRAADLGLNTVIVEREATLGGVCLNVGCIPSKALL 177

Query: 77  HVAAVIDETAAMASHGVTFGKPEIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVRGNG 136
           HVAAVIDETAAMASHGVTFGKP+IDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVV G+G
Sbjct: 178 HVAAVIDETAAMASHGVTFGKPQIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVNGDG 237

Query: 137 QFAGPNHIEVTAEDGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQVPKR 196
           QFAGPNHIEVTA DGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQVPKR
Sbjct: 238 QFAGPNHIEVTAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQVPKR 297

Query: 197 MLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKT 256
           MLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKT
Sbjct: 298 MLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKT 357

Query: 257 KTVAVEALXLYIRPTRRA 274
           KTVAVEAL   I+ T  A
Sbjct: 358 KTVAVEALPEGIKVTFEA 375


>gi|300312271|ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3
           component lipoamide dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score =  125 bits (313), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 38  YSAAFRAADLGLNTVIVERDATL------GGVCLNVGCIPSKALLHVAAVIDETA-AMAS 90
           Y AA RAA LG NT  ++           GG C NVGCIPSKALL  +   +  +   A 
Sbjct: 17  YIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKALLQSSEHYEHASHGFAE 76

Query: 91  HGVTFGKPEIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVRGNGQF--AGPNHIEVTA 148
           HG+      ++++K+   K+ V+     G+  + K  KV    G G F     N  E+  
Sbjct: 77  HGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVSFFHGRGSFVKGDANGYEIKV 136

Query: 149 EDGSKKVVQFKHAIIAAGSSVVNLPFVPQDPR-IVDSTGALELRQVPKRMLVIGGGIIGL 207
              +++ +  KH I+A GS+   LP    D + I+ +TGAL + +VPK++ VIG G+IGL
Sbjct: 137 AGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSITEVPKKLGVIGAGVIGL 196

Query: 208 EMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKTKTVAVEA 263
           EM +V+  LGA + V+E +   +   D  + K  QK   K+   V +  K  A++A
Sbjct: 197 EMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGLAVNLGVKIGAIKA 252


>gi|300312608|ref|YP_003776700.1| glutathione reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 8/212 (3%)

Query: 27  DVMVLGGGPGGYSAAFRAADLGLNTVIVERDATLGGVCLNVGCIPSKALLHVAAVIDETA 86
           D+  +GGG GG  AA  A+  G    + E+   LGG C+N+GCIP K + + A   +E A
Sbjct: 7   DLFTIGGGSGGVRAARFASQAGARVGLAEK-GDLGGTCVNLGCIPKKLMSYSAHYHEEFA 65

Query: 87  AMASHGVTF-GKPEIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVRGNGQFAGPNHIE 145
             A +G T  G+P  D   L A KD+ I  +      +    KV + RG  +    + + 
Sbjct: 66  DAAGYGWTLNGQPSFDWSALMANKDREIAHLNDIYLRLLDNAKVSLHRGFAKVEDAHTVN 125

Query: 146 VTAEDGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQVPKRMLVIGGGII 205
           V   DG +     +H ++A G    + P +P     + S     L+ +P+R +V+GGG I
Sbjct: 126 V---DGQRFTA--RHILVATGGRP-DKPAIPGAELGITSDDFFHLKALPQRAVVLGGGYI 179

Query: 206 GLEMATVYSTLGARIDVVEMMDGLMQGADRDM 237
            +E+A++ + LG  + +V   + L++  D D+
Sbjct: 180 AVELASILNGLGCEVTLVYRRERLLRNMDADL 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,195
Number of extensions: 37143
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 3
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)